soedinglab / BaMMmotif2Links
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
☆15Updated 4 years ago
Alternatives and similar repositories for BaMMmotif2
Users that are interested in BaMMmotif2 are comparing it to the libraries listed below
Sorting:
- Parse GFF3 into Pandas dataframes☆30Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- Find common blocks and differences between DNA sequences☆42Updated last month
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- Python bindings for the TaxonKit library☆41Updated last month
- Plot multiple sequence alignment (MSA)☆16Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 10 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Updated 8 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 9 months ago
- Multiple sequence alignment visualizer☆31Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- ☆10Updated 6 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 5 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated 3 weeks ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated 3 weeks ago
- Generation and updating of protein families☆21Updated 2 weeks ago
- ☆14Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Updated 4 years ago
- Protein Sequence Annotation with Language Models☆25Updated 3 weeks ago