Alternatives and similar repositories for dna-nn:

Users that are interested in dna-nn are comparing it to the libraries listed below

• snurk / sg_sandbox
  Experimental String Graph construction and processing
  ☆25Updated last year
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated last year
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 4 months ago
• nanoporetech / fast5mod
  Extract modifed base call information from Guppy Fast5 files.
  ☆13Updated 2 years ago
• hanyue36 / nanoplexer
  Tool for demultiplexing Nanopore barcode sequence data
  ☆20Updated 3 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆50Updated last year
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 2 years ago
• mrvollger / SafFire
  ☆28Updated 6 months ago
• MeHelmy / princess
  ☆79Updated 8 months ago
• maickrau / ribotin
  ☆31Updated last month
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆32Updated last month
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆39Updated 8 months ago
• uio-bmi / graph_peak_caller
  ChIP-seq peak caller for reads mapped to a graph-based reference genome
  ☆21Updated 5 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆44Updated 6 months ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 4 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated last year
• tprodanov / parascopy
  Copy number estimation and variant calling for duplicated genes using WGS.
  ☆27Updated 3 weeks ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆16Updated 7 months ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆30Updated this week