A python package for calculating local cell specific networks
☆18Nov 17, 2023Updated 2 years ago
Alternatives and similar repositories for locCSN
Users that are interested in locCSN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for testing high-dimensional covariance matrices☆11Oct 5, 2017Updated 8 years ago
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆23Dec 15, 2018Updated 7 years ago
- ☆39Apr 21, 2026Updated 3 months ago
- ☆23Dec 8, 2023Updated 2 years ago
- 3rd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆15Jun 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- A statistical simulator for rational scRNA-seq experimental design☆14Dec 14, 2020Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- A dataset for realistic evaluation of noisy label methods☆15Dec 3, 2023Updated 2 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Deep joint-leaning single-cell multi-omics model☆16Jun 27, 2022Updated 4 years ago
- Issues and pull requests for BiocStyle should go here.☆15Jul 21, 2026Updated 3 weeks ago
- PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics☆22May 8, 2024Updated 2 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Jun 17, 2021Updated 5 years ago
- Inferring multi-modality dynamics for single cell genomics data☆14Dec 18, 2025Updated 7 months ago
- ☆17Oct 18, 2023Updated 2 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆25Feb 1, 2020Updated 6 years ago
- ☆22Jun 17, 2024Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆10Jul 17, 2023Updated 3 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆110Jul 3, 2023Updated 3 years ago
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- ☆41Aug 29, 2025Updated 11 months ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆11Jun 22, 2021Updated 5 years ago
- Code: TPAMI2020-Truncated Robust Principle Component Analysis with A General Optimization Framework"☆12Nov 27, 2022Updated 3 years ago
- Global spectral clustering in dynamic networks☆21Sep 9, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15May 20, 2026Updated 2 months ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 5 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- [ACM MM 2025 🔥 Oral] MVISU-Bench: Benchmarking Mobile Agents for Real-World Tasks by Multi-App, Vague, Interactive, Single-App and Uneth…☆15Mar 13, 2026Updated 5 months ago
- ☆15Aug 5, 2022Updated 4 years ago