xuranw / locCSN
A python package for calculating local cell specific networks
☆16Updated last year
Alternatives and similar repositories for locCSN:
Users that are interested in locCSN are comparing it to the libraries listed below
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆8Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆34Updated 9 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- The Software of UnionCom Algorithm☆25Updated 6 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 5 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆43Updated last month
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- ☆12Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆55Updated 10 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago
- ☆44Updated 5 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆60Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆18Updated last year
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 4 months ago
- ☆38Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆65Updated this week
- ☆21Updated 2 years ago