deweylab / CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
☆65Updated last year
Alternatives and similar repositories for CellO:
Users that are interested in CellO are comparing it to the libraries listed below
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Single-Cell Clustering Assessment Framework☆99Updated last year
- A docker image for single-cell analysis☆82Updated last month
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆89Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Tools for single-cell data processing☆122Updated 9 months ago
- ☆69Updated 11 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 7 months ago
- software to detect doublets☆90Updated 2 months ago
- R package to access DoRothEA's regulons☆142Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆37Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Detect doublets in single-cell RNA-seq data☆36Updated 5 years ago
- ☆57Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- Convert between AnnData and SingleCellExperiment☆132Updated this week
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- ☆64Updated last year
- R package for Pathway RespOnsive GENe activity inference☆100Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- ☆67Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆78Updated last year
- ☆46Updated 2 years ago
- Single Cell Analysis of Five'Ends☆48Updated last year