deweylab / CellOLinks
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
☆68Updated 2 years ago
Alternatives and similar repositories for CellO
Users that are interested in CellO are comparing it to the libraries listed below
Sorting:
- ☆71Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆110Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Tools for single-cell data processing☆131Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- software to detect doublets☆95Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A docker image for single-cell analysis☆103Updated 2 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- Doublet detection in single-cell RNA-seq data.☆97Updated 11 months ago
- Clonotype Neighbor Graph Analysis☆93Updated 5 months ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Convert between AnnData and SingleCellExperiment☆143Updated last week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- Visualization of scRNA-seq data.☆99Updated 3 years ago
- epigenome analysis to rank transcription factors☆32Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Scanpy use cases.☆88Updated 5 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago