deweylab / CellOLinks
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
☆65Updated last year
Alternatives and similar repositories for CellO
Users that are interested in CellO are comparing it to the libraries listed below
Sorting:
- Single-Cell Clustering Assessment Framework☆101Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 7 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆69Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- ☆64Updated last year
- Detect doublets in single-cell RNA-seq data☆38Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆86Updated 11 months ago
- Tools for single-cell data processing☆124Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆55Updated last week
- A docker image for single-cell analysis☆88Updated 4 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆134Updated this week
- ☆73Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- ☆46Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month
- ☆27Updated 7 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- ☆57Updated 4 years ago
- software to detect doublets☆92Updated 5 months ago