SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
☆17Apr 9, 2019Updated 7 years ago
Alternatives and similar repositories for SamuROI
Users that are interested in SamuROI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15May 28, 2026Updated 2 weeks ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- a Python machine learning library for neurophysiology data☆36Nov 10, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This is the open source repository for SIGGRAPH 2018 paper "Space-time Tomography for Continuously Deforming Objects". https://vccimagin…☆14Aug 13, 2018Updated 7 years ago
- A Python implementation of fast non-negative deconvolution☆23Oct 22, 2019Updated 6 years ago
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- Python-implementation of the inverse current source density (iCSD) methods from http://software.incf.org/software/csdplotter☆13May 15, 2025Updated last year
- Synthesizing moving textures with parameterized features☆15Sep 26, 2022Updated 3 years ago
- Talk at scipy 2018: Interactive 3d Visualization in Jupyter☆14Jul 14, 2018Updated 7 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 3 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Dec 29, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Asynchronous Computing Made ESI☆14Updated this week
- Datasets☆26Apr 30, 2015Updated 11 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 4 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- A SciUnit library for validation testing of spiking neural network models.☆17Aug 1, 2024Updated last year
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 3 months ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Sep 3, 2016Updated 9 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 5 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- ☆14Oct 13, 2023Updated 2 years ago
- Gaussian process factor analysis with Poisson observations☆21Jul 6, 2022Updated 3 years ago
- Tools for processing 2P recordings☆133Oct 9, 2023Updated 2 years ago
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- Course material for fundamentals in digital image processing☆23Sep 19, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for generating benchmark data for evaluating spike sorting methods☆22Oct 6, 2020Updated 5 years ago
- ☆13Jul 2, 2017Updated 8 years ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆75Feb 26, 2026Updated 3 months ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 4 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Jun 1, 2026Updated last week