samuroi / SamuROILinks
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
☆17Updated 6 years ago
Alternatives and similar repositories for SamuROI
Users that are interested in SamuROI are comparing it to the libraries listed below
Sorting:
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- 3-D imaging visualisation through slicing☆30Updated 6 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated last year
- A curated list of awesome Janelia software☆17Updated 5 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 2 weeks ago
- Napari plugin for working with video files.☆12Updated 2 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Standalone cellfinder cell detection algorithm☆19Updated last year
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 4 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆85Updated this week
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11Updated 3 years ago
- Optimize image processing workflows in napari☆18Updated 3 months ago
- Loading and saving of image data.☆10Updated last year
- ☆12Updated 3 weeks ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 9 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago
- ☆12Updated 4 years ago
- A JupyterBook site for napari workshop materials☆11Updated 3 years ago
- ☆16Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 11 months ago
- Napari gaming☆17Updated 3 years ago