samuroi / SamuROILinks
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
☆17Updated 6 years ago
Alternatives and similar repositories for SamuROI
Users that are interested in SamuROI are comparing it to the libraries listed below
Sorting:
- 3-D imaging visualisation through slicing☆31Updated last year
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Updated 2 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Updated this week
- Napari plugin for working with video files.☆13Updated 5 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- A curated list of awesome Janelia software☆17Updated 11 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 7 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆33Updated 3 weeks ago
- website for the napari image viewer☆47Updated this week
- A Python package for feature extraction of neural morphologies☆46Updated 3 months ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated last week
- https://nutil.readthedocs.io/en/latest/☆13Updated 2 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- ☆13Updated 3 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- ☆20Updated 7 years ago
- A JupyterBook site for napari workshop materials☆10Updated 3 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆25Updated 9 months ago
- motion correction☆17Updated 3 years ago
- ☆34Updated 8 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Updated this week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Keras network for spike detection from calcium traces☆12Updated 5 years ago
- Repository for collecting materials from nwb hackathons☆24Updated 3 months ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago