Activity Quantification and Analysis for molecular spatiotemporal signals
☆36Aug 9, 2026Updated this week
Alternatives and similar repositories for AQuA2
Users that are interested in AQuA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55May 10, 2024Updated 2 years ago
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆16May 20, 2025Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- clathrin-mediated endocytosis analysis☆11May 29, 2026Updated 2 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- [beta] An entry-level computational modeling workshop, developed for internal use at Brown University but hopefully useful to many!☆11Dec 16, 2020Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆167Updated this week
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆100Jun 30, 2026Updated last month
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Materials for RNN tutorial @ Harvard-MIT Theoretical and Computational Neuroscience Journal Club☆18Feb 13, 2020Updated 6 years ago
- For developers and people training MARS models☆19Mar 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction …☆53Apr 7, 2026Updated 4 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- pipeline for volumetric cell segmentation☆15Feb 12, 2026Updated 6 months ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- Microglia morphology quantification tool☆14Apr 28, 2021Updated 5 years ago
- A python package for the topological analysis of neurons.☆29Feb 26, 2025Updated last year
- SuperAnimal models supporting data☆19Jan 20, 2025Updated last year
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools pr…☆16Mar 21, 2022Updated 4 years ago
- cell detection in calcium imaging recordings☆467Updated this week
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- Python library to read PicoQuant PTU files (raw TTTR data) as well as build FLIM image☆10Jul 19, 2024Updated 2 years ago
- ☆15Dec 19, 2022Updated 3 years ago
- Read Becker & Hickl SDT files.☆14Jul 29, 2026Updated 2 weeks ago
- Cell tracking for longitudinal calcium imaging recordings.☆19Dec 11, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is a ray tracer I wrote for a univeristy assignment last year. I don't claim that it is fast or good code.☆13Sep 27, 2018Updated 7 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 6 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆41Jun 29, 2026Updated last month
- motion correction☆17Jan 27, 2023Updated 3 years ago
- MI-BCI is the acronym for minimal invasive brain-computer interface (BCI). The repository is the sample code for the paper "Intracranial…☆10Jun 12, 2022Updated 4 years ago
- Method to find contrastive dimensions between experimental conditions☆29Mar 29, 2026Updated 4 months ago
- A simple SWC-file importer for Blender. This addon for Blender allows you to import files from e.g. neuromorpho.org.☆13Nov 5, 2023Updated 2 years ago