Activity Quantification and Analysis for molecular spatiotemporal signals
☆38Oct 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for AQuA2
Users that are interested in AQuA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆56May 10, 2024Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆58Sep 15, 2023Updated 3 years ago
- ☆43Sep 29, 2021Updated 5 years ago
- Creates a Blender Object from an SWC formatted file☆10Jun 30, 2020Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆171Oct 27, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts and utilities for processing electrophysiology data☆11Jul 21, 2020Updated 6 years ago
- ☆12Nov 1, 2023Updated 3 years ago
- Julia implementation of the LSDD change point detection method.☆10Jan 15, 2024Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- A modest collection of files implementing Euler angle calculations in Matlab☆10Jan 28, 2022Updated 4 years ago
- [beta] An entry-level computational modeling workshop, developed for internal use at Brown University but hopefully useful to many!☆11Dec 16, 2020Updated 5 years ago
- Generate dicrete colored (power law) noise☆10May 22, 2018Updated 8 years ago
- cell detection in calcium imaging recordings☆475Sep 12, 2026Updated last month
- https://nutil.readthedocs.io/en/latest/☆13Jun 15, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆21Aug 29, 2024Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 7 years ago
- miniscope analysis pipeline with interactive visualizations☆101Aug 25, 2026Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆13Nov 26, 2020Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- For developers and people training MARS models☆19Mar 15, 2024Updated 2 years ago
- Access the Allen Brain Atlas API from MATLAB☆10Oct 15, 2017Updated 9 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction …☆53Apr 7, 2026Updated 6 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆32Oct 13, 2023Updated 3 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 6 months ago
- Toy meta-RL environments for testing algorithms implementations☆10Feb 21, 2024Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆40Nov 24, 2023Updated 2 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- A python and C++ library for reading and writing neuronal morphologies☆29Feb 26, 2025Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tutorial on the parallel coordinates visualization method. Examples, interpretation, data, links and more.☆10Mar 31, 2017Updated 9 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 3 years ago
- pipeline for volumetric cell segmentation☆16Updated this week
- ☆16Nov 2, 2016Updated 10 years ago
- Cell tracking for longitudinal calcium imaging recordings.☆19Dec 11, 2025Updated 10 months ago
- A python package for the topological analysis of neurons.☆29Feb 26, 2025Updated last year
- A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools pr…☆16Mar 21, 2022Updated 4 years ago