yu-lab-vt / AQuA2Links
Activity Quantification and Analysis for molecular spatiotemporal signals
☆27Updated 3 weeks ago
Alternatives and similar repositories for AQuA2
Users that are interested in AQuA2 are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆34Updated 3 months ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- ☆52Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- ☆18Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated last month
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- motion correction☆17Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆94Updated 10 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Brainways☆21Updated 3 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated this week
- Histology processing☆69Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 5 months ago
- ☆45Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- Region Of Interest Classification and Tracking☆25Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 11 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last week
- Automated 3D cell detection in very large images☆217Updated 2 weeks ago
- Flow-Registration toolbox for 2P motion compensation☆25Updated this week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago