yu-lab-vt / AQuA2
Activity Quantification and Analysis for molecular spatiotemporal signals
☆17Updated 3 months ago
Alternatives and similar repositories for AQuA2:
Users that are interested in AQuA2 are comparing it to the libraries listed below
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆47Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Region Of Interest Classification and Tracking☆16Updated this week
- motion correction☆16Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Histology processing☆65Updated this week
- miniscope analysis pipeline with interactive visualizations☆92Updated 7 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- ☆34Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 3 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- https://nutil.readthedocs.io/en/latest/☆12Updated this week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated last week
- Analysis package for miniscope data☆13Updated 2 years ago
- ☆52Updated 6 months ago
- Tools to work with Allen Inst CCF data in matlab☆128Updated last year
- ☆11Updated 8 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- IBL core shared libraries☆62Updated this week
- Browser-based NWB visualization and DANDI exploration☆53Updated this week
- ☆18Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated 3 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated 2 weeks ago