Activity Quantification and Analysis for molecular spatiotemporal signals
☆34Mar 5, 2026Updated last month
Alternatives and similar repositories for AQuA2
Users that are interested in AQuA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆56May 10, 2024Updated last year
- ☆43Sep 29, 2021Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- clathrin-mediated endocytosis analysis☆11Mar 12, 2026Updated last month
- [beta] An entry-level computational modeling workshop, developed for internal use at Brown University but hopefully useful to many!☆11Dec 16, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- For developers and people training MARS models☆19Mar 15, 2024Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Cell tracking for longitudinal calcium imaging recordings.☆15Dec 11, 2025Updated 4 months ago
- Materials for RNN tutorial @ Harvard-MIT Theoretical and Computational Neuroscience Journal Club☆18Feb 13, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working with single-neuron morphological reconstructions☆22Feb 14, 2026Updated 2 months ago
- An exploration of how to use inter-subject representational similarity analysis (is-RSA) to study individual differences in brain activit…☆20Apr 22, 2020Updated 5 years ago
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 6 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- pipeline for volumetric cell segmentation☆14Feb 12, 2026Updated 2 months ago
- SuperAnimal models supporting data☆19Jan 20, 2025Updated last year
- A python package for the topological analysis of neurons.☆28Feb 26, 2025Updated last year
- Microglia morphology quantification tool☆14Apr 28, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- a visualization method for neural data☆245Apr 4, 2025Updated last year
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- A tidy MATLAB implementation of angular spectrum method to calculate beam propagation. Interesting examples included.☆22Jul 7, 2022Updated 3 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆102Aug 11, 2025Updated 8 months ago
- A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools pr…☆14Mar 21, 2022Updated 4 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- ☆15Dec 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Mar 26, 2026Updated 2 weeks ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆120Aug 18, 2025Updated 7 months ago
- MI-BCI is the acronym for minimal invasive brain-computer interface (BCI). The repository is the sample code for the paper "Intracranial …☆10Jun 12, 2022Updated 3 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Method to find contrastive dimensions between experimental conditions☆28Mar 29, 2026Updated 2 weeks ago