zhaoxiaofei / bindashLinks
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
☆72Updated 6 months ago
Alternatives and similar repositories for bindash
Users that are interested in bindash are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 10 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 9 months ago
- ☆44Updated 4 years ago
- Remove human reads from a sequencing run☆47Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Library of sketching functions used by PopPUNK☆31Updated 10 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 5 months ago
- Recombination-free trees☆63Updated 5 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 4 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Differential k-mer analysis☆40Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Updated 2 weeks ago
- Genome size estimation from long read overlaps☆80Updated 2 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago