zhaoxiaofei / bindashLinks
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
☆66Updated 2 weeks ago
Alternatives and similar repositories for bindash
Users that are interested in bindash are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 9 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Genome size estimation from long read overlaps☆58Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- Differential k-mer analysis☆36Updated last year
- Recombination-free trees☆58Updated 3 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Index kmtricks bf matrices☆44Updated 7 months ago
- Colinear block visualisation tool☆31Updated last year
- ☆45Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆41Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- Library of sketching functions used by PopPUNK☆31Updated 3 months ago
- strain-level analysis tools☆38Updated 8 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆46Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆74Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago