Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
☆75Apr 1, 2026Updated 5 months ago
Alternatives and similar repositories for bindash
Users that are interested in bindash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- K-mer substring space decomposition☆44May 27, 2026Updated 3 months ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Follow up to Grace Blackwell's 661k dataset, for 2023☆156Jun 10, 2026Updated 3 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆111Jun 2, 2026Updated 3 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- ☆85Sep 13, 2023Updated 3 years ago
- online notebooks for a review of genome sketching☆60Sep 23, 2019Updated 6 years ago
- Aligns short reads using dynamic seed size with strobemers☆207Updated this week
- ☆15Dec 8, 2022Updated 3 years ago
- Recombination-free trees☆73Jul 24, 2026Updated last month
- Fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, comparison): 16 million viral contigs analyzed in less…☆103Sep 10, 2026Updated last week
- ☆14Jan 31, 2020Updated 6 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Sep 15, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast genome and metagenome distance estimation using MinHash☆452Sep 19, 2025Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆557Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆171Sep 9, 2026Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Aug 27, 2026Updated 3 weeks ago
- ☆44Nov 20, 2021Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 6 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Sep 15, 2026Updated last week
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆61Mar 26, 2026Updated 5 months ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆120Dec 13, 2024Updated last year
- ☆24Apr 2, 2021Updated 5 years ago