InfectionMedicineProteomics / DPKSView external linksLinks
Data Processing Kitchen Sink for proteomics data
☆13Jan 13, 2026Updated last month
Alternatives and similar repositories for DPKS
Users that are interested in DPKS are comparing it to the libraries listed below
Sorting:
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 7 months ago
- Core Utils for Mass Spectrometry Data☆17Dec 15, 2025Updated 2 months ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆19Feb 6, 2026Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 4 months ago
- Python client for PRIDE Archive Rest API.☆36Feb 6, 2026Updated last week
- Generating biologically informed neural networks☆57Feb 3, 2025Updated last year
- ☆27May 20, 2025Updated 8 months ago
- Synthetic mzML writer☆13Mar 10, 2025Updated 11 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Dec 17, 2025Updated last month
- ☆13Mar 19, 2024Updated last year
- PanGenomePipeline☆16Apr 10, 2024Updated last year
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 7 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆44Jan 14, 2026Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 2 years ago
- Visualize sequence and multiple sequence alignment (MSA)☆15May 30, 2022Updated 3 years ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Feb 27, 2025Updated 11 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Jan 7, 2026Updated last month
- The Multiplierz Proteomics Library☆24Apr 27, 2024Updated last year
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Discovery of biological sequence motifs in R☆29Dec 20, 2018Updated 7 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated last month
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- ☆68May 7, 2024Updated last year
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Jan 30, 2025Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 8 months ago
- ☆40Jan 20, 2026Updated 3 weeks ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago
- An R package to visualize bigwigs.☆32Jul 5, 2022Updated 3 years ago
- Deep learning framework for proteomics☆145Jan 30, 2026Updated 2 weeks ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Feb 1, 2024Updated 2 years ago
- Python framework for Deep Learning in Proteomics☆38Updated this week
- Rapid and scalable homolog identification for bacterial genomes☆33Aug 27, 2019Updated 6 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- A genome alignment and visualization system☆32Nov 15, 2020Updated 5 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago