Data Processing Kitchen Sink for proteomics data
☆14Jun 15, 2026Updated last month
Alternatives and similar repositories for DPKS
Users that are interested in DPKS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- Bayesian Optimization for protein design and mining☆26Jul 2, 2026Updated 3 weeks ago
- Generating biologically informed neural networks☆62Feb 3, 2025Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- ☆13Mar 19, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Jul 20, 2026Updated last week
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 2 months ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- ☆12Nov 26, 2024Updated last year
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Jun 27, 2022Updated 4 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated 2 weeks ago
- ☆34Jul 16, 2026Updated last week
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jul 21, 2026Updated last week
- Deep learning framework for proteomics☆156Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Jul 22, 2026Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- The Multiplierz Proteomics Library☆24Apr 27, 2024Updated 2 years ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆23Updated this week
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- Python client for PRIDE Archive Rest API.☆40Jul 2, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A high-throughput data extraction package for LC-MS data.☆10Jun 7, 2023Updated 3 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆162Jul 22, 2026Updated last week
- quantms workflow for DIANN tool including DIA and DDA analysis☆18Jun 16, 2026Updated last month
- ☆24Apr 9, 2025Updated last year
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Regex alternative syntax. Make regex readable.☆10Mar 14, 2018Updated 8 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Jul 1, 2026Updated 3 weeks ago
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆72May 7, 2024Updated 2 years ago
- Visualize sequence and multiple sequence alignment (MSA)☆15May 30, 2022Updated 4 years ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Python framework for Deep Learning in Proteomics☆41Jun 25, 2026Updated last month
- The MPI Bioinformatics Toolkit☆74Mar 28, 2026Updated 4 months ago
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 8 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 3 months ago