Alternatives and similar repositories for DPKS

Users that are interested in DPKS are comparing it to the libraries listed below

• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆26Updated last month
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 5 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆20Updated last week
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆20Updated last year
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆13Updated 4 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 10 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• PayneLab / ProteomicsEducation
  ☆36Updated 4 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 2 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 9 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• bittremieuxlab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated last month
• BioComputingUP / ProSeqViewer
  Visualize sequence and multiple sequence alignment (MSA)
  ☆15Updated 3 years ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated this week
• CaronLab / MhcVizPipe
  A reporting pipeline for visualization of immunopeptidomics MS data.
  ☆15Updated 3 years ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆18Updated 4 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated 2 weeks ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆26Updated this week
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆26Updated 3 weeks ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆17Updated 8 months ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆52Updated 3 weeks ago
• MannLabs / timsrust
  ☆28Updated 6 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆30Updated last year
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated last week