InfectionMedicineProteomics / DPKSLinks
Data Processing Kitchen Sink for proteomics data
☆11Updated 3 months ago
Alternatives and similar repositories for DPKS
Users that are interested in DPKS are comparing it to the libraries listed below
Sorting:
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆12Updated last month
- Python client for PRIDE Archive Rest API.☆24Updated 3 months ago
- ☆62Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- A Python interface to proteomics data repositories☆34Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆19Updated this week
- MS/MS prediction for peptides☆24Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 5 months ago
- A label free quantification tool.☆17Updated last month
- ☆33Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆52Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- pathway and network analysis for metabolomics☆42Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 3 months ago
- Analysis platform for large-scale dose-dependent data☆25Updated 2 months ago
- R package for functionally scoring phosphorylation sites☆22Updated 5 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last month
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- Core Utils for Mass Spectrometry Data☆17Updated 4 months ago
- A library for QC report based on MultiQC framework☆15Updated this week
- ☆55Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated this week
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated this week
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 5 months ago