Alternatives and similar repositories for DPKS

Users that are interested in DPKS are comparing it to the libraries listed below

• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 weeks ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆44Updated 3 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• MannLabs / timsrust
  ☆26Updated 2 weeks ago
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆12Updated last week
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated last month
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated 2 weeks ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆25Updated 6 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• pFindStudio / pGlyco3
  ☆20Updated 3 months ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆17Updated 2 months ago
• jspaezp / elfragmentador
  This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…
  ☆10Updated 6 months ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆25Updated 2 weeks ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• PayneLab / ProteomicsEducation
  ☆33Updated last week
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated last month
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆30Updated 3 months ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆24Updated last month
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• gtluu / timsconvert
  ☆37Updated 2 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated this week
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated last week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated this week