InfectionMedicineProteomics / DPKSLinks
Data Processing Kitchen Sink for proteomics data
☆11Updated 2 months ago
Alternatives and similar repositories for DPKS
Users that are interested in DPKS are comparing it to the libraries listed below
Sorting:
- A Python interface to proteomics data repositories☆34Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆19Updated this week
- A label free quantification tool.☆17Updated 2 weeks ago
- MS/MS prediction for peptides☆23Updated 4 years ago
- Python client for PRIDE Archive Rest API.☆24Updated 3 months ago
- ☆27Updated last month
- ☆62Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 2 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆12Updated 2 weeks ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- pathway and network analysis for metabolomics☆42Updated last year
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- ☆33Updated last week
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- Analysis platform for large-scale dose-dependent data☆25Updated last month
- A library for QC report based on MultiQC framework☆15Updated last week
- ☆14Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆25Updated 7 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆46Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆13Updated 2 years ago