GunzIvan28 / rMAPView external linksLinks
Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
☆26Jan 30, 2025Updated last year
Alternatives and similar repositories for rMAP
Users that are interested in rMAP are comparing it to the libraries listed below
Sorting:
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Dec 17, 2025Updated last month
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- ☆22Apr 20, 2023Updated 2 years ago
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆84May 7, 2025Updated 9 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 7 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Apr 24, 2025Updated 9 months ago
- A pipeline for Bacterial Whole genome sequence data analysis☆16Jul 24, 2022Updated 3 years ago
- ☆57Jan 7, 2026Updated last month
- ☆10May 14, 2025Updated 9 months ago
- A simple pipeline for bacterial assembly and quality control☆16Jan 30, 2026Updated 2 weeks ago
- whole genome MLST analysis☆51Jun 13, 2025Updated 8 months ago
- A genome alignment and visualization system☆32Nov 15, 2020Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Dec 5, 2023Updated 2 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- ☆13May 27, 2025Updated 8 months ago
- ☆16Jun 21, 2023Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Jun 14, 2025Updated 8 months ago
- vSNP -- validate SNPs☆22Sep 19, 2024Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Oct 10, 2023Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆148Feb 2, 2026Updated last week
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated last month
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated last month
- Interpretative standards for AMR genotypes☆27Updated this week
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Feb 5, 2026Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated last year
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆186Feb 6, 2026Updated last week
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Data Processing Kitchen Sink for proteomics data☆13Jan 13, 2026Updated last month
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 3 weeks ago
- ☆15May 22, 2025Updated 8 months ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- ☆11Mar 10, 2024Updated last year