Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
☆27Jan 30, 2025Updated last year
Alternatives and similar repositories for rMAP
Users that are interested in rMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 5 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 8 months ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- ☆21May 6, 2025Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆26Apr 20, 2023Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- Repo for Proksee Cmd Line Tools☆31Feb 22, 2023Updated 3 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated 2 years ago
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.☆10Apr 9, 2019Updated 7 years ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- Trim lots of metagenomics samples all at once☆10May 2, 2024Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- This is the webpage of the ESGEM-AMR Working Group☆16Oct 23, 2026Updated last week
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A flexible pipeline for complete analysis of bacterial genomes☆526Aug 5, 2026Updated 3 months ago
- The MLST pipeline developed by the PathOGiST research group☆39Nov 29, 2023Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Interpretative standards for AMR genotypes☆33Updated this week
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- A user-friendly pipeline for viral diversity analysis and characterization.☆16Oct 28, 2026Updated last week
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 8 months ago
- A simple pipeline for bacterial assembly and quality control☆17Oct 22, 2026Updated 2 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- The tool for in silico serotyping☆66Oct 26, 2026Updated last week