CK7 / abawaca
abawaca is a binning program for metagenomics
☆13Updated 7 years ago
Alternatives and similar repositories for abawaca
Users that are interested in abawaca are comparing it to the libraries listed below
Sorting:
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Find Unique genomic Regions☆29Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆30Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 11 months ago
- COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition a…☆17Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- ☆22Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Strain resolved metagenome simulator☆13Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated 3 months ago
- ☆12Updated 9 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago