abawaca is a binning program for metagenomics
☆13May 20, 2017Updated 8 years ago
Alternatives and similar repositories for abawaca
Users that are interested in abawaca are comparing it to the libraries listed below
Sorting:
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 8 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- ☆14Apr 30, 2020Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- Miscellaneous scripts☆24Sep 7, 2016Updated 9 years ago
- Clustering cONtigs with COverage and ComposiTion☆137Mar 6, 2020Updated 5 years ago
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆17Jul 9, 2024Updated last year
- COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition a…☆17Mar 12, 2017Updated 8 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated last month
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Jul 9, 2024Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Deep learning for Metagenome Assembly Error Detection☆25Nov 30, 2020Updated 5 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 6 years ago
- Assembly Likelihood Estimator☆35Mar 18, 2023Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆119Feb 10, 2023Updated 3 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last month
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Aug 12, 2019Updated 6 years ago
- Phylogenetic placement and downstream analysis☆89Jan 28, 2026Updated last month
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- StrainFinder☆29Jul 8, 2018Updated 7 years ago
- Interactive tutorials for using scikit-bio in biological research☆65Feb 20, 2026Updated last week
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆93Nov 20, 2017Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- A genome alignment and visualization system☆33Nov 15, 2020Updated 5 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Nov 24, 2025Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 5 months ago