tseemann / nullarbor
"Reads to report" for public health and clinical microbiology
☆139Updated last year
Alternatives and similar repositories for nullarbor:
Users that are interested in nullarbor are comparing it to the libraries listed below
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆142Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆144Updated 2 weeks ago
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆82Updated 3 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆106Updated 2 weeks ago
- Pan-genome wide association studies☆193Updated 11 months ago
- The ARTIC field bioinformatics pipeline☆122Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆125Updated last week
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆120Updated this week
- Long-read mock community experiments☆105Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Convert various sequence formats to FASTA☆135Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- Short Read Sequence Typing for Bacterial Pathogens☆131Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- ☆125Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆80Updated this week
- Bacterial ribosomal RNA predictor☆242Updated last year
- Nanopore data assembler☆151Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆121Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆118Updated last year
- Create a tree using Mash distances☆163Updated last year
- ☆206Updated 3 months ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago