Alternatives and similar repositories for nullarbor

Users that are interested in nullarbor are comparing it to the libraries listed below

• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆140Updated last year
• artic-network / fieldbioinformatics
  The ARTIC field bioinformatics pipeline
  ☆125Updated last month
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆149Updated 3 weeks ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆82Updated 3 months ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆106Updated 3 years ago
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆91Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆115Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆140Updated last week
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆126Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆164Updated 3 months ago
• andersen-lab / ivar
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  ☆125Updated 2 weeks ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆118Updated 2 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆135Updated 5 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆146Updated 4 months ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆109Updated 4 months ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆167Updated last week
• ncbi / SKESA
  SKESA assembler
  ☆122Updated 10 months ago
• loneknightpy / idba
  ☆130Updated 2 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆153Updated 4 months ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆97Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated last month
• rrwick / Perfect-bacterial-genome-tutorial
  ☆143Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆156Updated last year
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 4 years ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆104Updated 4 years ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆74Updated last year
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆138Updated 4 years ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆98Updated 4 months ago