Alternatives and similar repositories for nullarbor

Users that are interested in nullarbor are comparing it to the libraries listed below

• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆151Updated last month
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated last week
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆128Updated last month
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆87Updated 5 years ago
• andersen-lab / ivar
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  ☆133Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆84Updated 4 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated last month
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆120Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆166Updated 3 weeks ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆157Updated 10 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆143Updated 2 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆124Updated 2 weeks ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆130Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆113Updated 9 months ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆99Updated last year
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆91Updated 2 years ago
• ncbi / SKESA
  SKESA assembler
  ☆124Updated last year
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆104Updated 2 months ago
• loneknightpy / idba
  ☆132Updated 2 years ago
• cmks / DAS_Tool
  DAS Tool
  ☆169Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆158Updated 7 months ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆166Updated 9 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆155Updated last year
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆149Updated 4 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 5 years ago
• ngs-fzb / MTBseq_source
  MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…
  ☆47Updated 5 months ago