B-UMMI / long-read-catalogLinks
catalog for long-read sequencing tools
☆32Updated 2 years ago
Alternatives and similar repositories for long-read-catalog
Users that are interested in long-read-catalog are comparing it to the libraries listed below
Sorting:
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- ☆29Updated 4 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 4 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- ☆49Updated 9 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- ☆26Updated 6 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Structural variant caller☆55Updated 3 years ago
- ☆29Updated 3 months ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 3 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago