Alternatives and similar repositories for long-read-catalog

Users that are interested in long-read-catalog are comparing it to the libraries listed below

• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated last month
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• SouthGreenPlatform / culebrONT
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Updated 9 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 4 months ago
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated 3 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆31Updated 5 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆51Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 5 years ago
• MeHelmy / princess
  ☆83Updated 10 months ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated last month
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 5 months ago
• johnssproul / RepeatProfiler
  ☆26Updated 10 months ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• elimoss / metagenomics_workflows
  Workflows for metagenomic sequence data processing and analysis.
  ☆16Updated 6 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• farhangus / Sniffles2_plot
  ☆32Updated last year
• cerebis / bin3C
  Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
  ☆24Updated 6 months ago