escamero / mirlynView external linksLinks
☆13Aug 13, 2024Updated last year
Alternatives and similar repositories for mirlyn
Users that are interested in mirlyn are comparing it to the libraries listed below
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆17Nov 8, 2025Updated 3 months ago
- ☆11Apr 17, 2025Updated 9 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 2 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Add alluvial / sankey diagram layers to a ggplot☆21Dec 3, 2025Updated 2 months ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Updated this week
- Implementation of ToL genome assembly workflows☆26Updated this week
- R package for microbial pangenomics☆24Apr 12, 2022Updated 3 years ago
- Normalized Stochasticity Ratio in community assembly☆29Oct 22, 2024Updated last year
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Nov 21, 2025Updated 2 months ago
- 📚Bioinformatics Technology Lab common code library☆28Feb 3, 2026Updated last week
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated 11 months ago
- Bayesian network plot for the enrichment analysis results☆67Oct 2, 2024Updated last year
- Extract Sequence from Genome According to Annotation File☆39Apr 16, 2025Updated 9 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- A genome alignment and visualization system☆32Nov 15, 2020Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Jan 3, 2026Updated last month
- ☆13May 27, 2025Updated 8 months ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- ☆35Dec 24, 2020Updated 5 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Feb 25, 2023Updated 2 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆96Jan 9, 2026Updated last month
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Dec 13, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- ☆11Apr 5, 2021Updated 4 years ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated last month
- ☆10Mar 24, 2025Updated 10 months ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 8 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- Coarse-grained simulations of biomolecular complexes☆13Aug 2, 2023Updated 2 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Sep 3, 2024Updated last year