JCVenterInstitute / PanGenomePipelineLinks
PanGenomePipeline
☆16Updated last year
Alternatives and similar repositories for PanGenomePipeline
Users that are interested in PanGenomePipeline are comparing it to the libraries listed below
Sorting:
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆10Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 6 months ago
- ☆11Updated last year
- Strain Prediction and Analysis with Representative SEquence☆19Updated 5 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Profiler for metagenomics based on NGLess☆13Updated last year
- ☆10Updated 3 weeks ago
- ☆13Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- ☆22Updated 2 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 11 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago