JCVenterInstitute / PanGenomePipeline
PanGenomePipeline
☆15Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for PanGenomePipeline
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆15Updated 6 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆10Updated 4 years ago
- Find Unique genomic Regions☆29Updated this week
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- A pipeline for whole genome assembly☆16Updated 2 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆10Updated 4 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- ☆19Updated 7 years ago
- ☆30Updated 3 years ago
- ☆25Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- A snakemake workflow for metagenomic projects☆14Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago