JCVenterInstitute / PanGenomePipelineLinks
PanGenomePipeline
☆16Updated last year
Alternatives and similar repositories for PanGenomePipeline
Users that are interested in PanGenomePipeline are comparing it to the libraries listed below
Sorting:
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- De novo VIral Genome Annotator☆23Updated last week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆11Updated 3 years ago
- ☆11Updated 4 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Updated 5 years ago
- ☆19Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- ☆11Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- ☆11Updated 2 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Quality control for phylogenetic analyses☆13Updated last month
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 11 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 8 months ago
- transposable element typing pipeline☆19Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago