Alternatives and similar repositories for PanGenomePipeline

Users that are interested in PanGenomePipeline are comparing it to the libraries listed below

• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆16Updated last year
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 4 months ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• DessimozLab / pyham
  ☆11Updated last month
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆22Updated last year
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Updated 9 years ago
• AliTVTeam / AliTV-perl-interface
  ☆11Updated 4 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated last year
• duchene / phylomad
  ☆19Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• SushiLab / mVIRs
  ☆13Updated last year
• kbaseattic / genome_annotation
  The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…
  ☆11Updated 5 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆13Updated 5 months ago
• tatumdmortimer / core-genome-alignment
  Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.
  ☆19Updated 7 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 6 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 3 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 7 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated last month
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 months ago
• UtaDaphniaLab / Gene_Annotation_Easy_Viewer
  Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.
  ☆11Updated 3 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆18Updated 3 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated 3 months ago
• adamd3 / BactSeq
  A nextflow pipeline for performing bacterial RNA-Seq data analysis.
  ☆12Updated 2 months ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated last year
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 7 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year