celiamtnez / snRNA-seq2_young
Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.
☆12Updated 3 years ago
Alternatives and similar repositories for snRNA-seq2_young:
Users that are interested in snRNA-seq2_young are comparing it to the libraries listed below
- ☆12Updated 3 years ago
- ☆12Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆11Updated 7 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- A gene expression signature scoring Python package.☆11Updated last month
- bioinformatics R test code☆13Updated 2 years ago
- ☆16Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆24Updated 2 months ago
- ☆20Updated last year
- Gene Expression Decomposition and Integration☆17Updated 5 months ago
- single cell and bulk RNASeq analysis scripts☆12Updated 3 years ago
- Scripts from the GBM cellular states paper☆18Updated 3 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆14Updated 5 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆15Updated 10 months ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 5 months ago
- ☆24Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago