UCSF-DSOS / bulk_RNA_seqLinks
RNA seq analysis using Bioconductor (analysis built on limma, edgeR)
☆12Updated 2 years ago
Alternatives and similar repositories for bulk_RNA_seq
Users that are interested in bulk_RNA_seq are comparing it to the libraries listed below
Sorting:
- scRNA seq analysis using Seurat V3☆13Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆27Updated 7 months ago
- ☆34Updated 5 years ago
- scWGCNA☆60Updated 2 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- ☆17Updated 11 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated 3 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- ☆32Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ☆31Updated last year
- scRNA-seq cell type identification☆43Updated 5 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆37Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆24Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆55Updated 4 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆20Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago