RNA seq analysis using Bioconductor (analysis built on limma, edgeR)
☆12Sep 23, 2022Updated 3 years ago
Alternatives and similar repositories for bulk_RNA_seq
Users that are interested in bulk_RNA_seq are comparing it to the libraries listed below
Sorting:
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆20Jun 26, 2025Updated 8 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Nov 17, 2020Updated 5 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Apr 19, 2020Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- Porting DESeq2 into python via rpy2☆67Jun 1, 2023Updated 2 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆17Jan 12, 2023Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆11Dec 29, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆34Feb 18, 2026Updated last week
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 2 years ago
- R package for creating simulated summary statistics and testing MR methods☆12Sep 2, 2020Updated 5 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- ☆44Oct 27, 2018Updated 7 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Dec 9, 2022Updated 3 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 2 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago