Alternatives and similar repositories for PipeRiboseq

Users that are interested in PipeRiboseq are comparing it to the libraries listed below

• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• jkimlab / msPIPE
  ☆19Updated 2 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆38Updated 7 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• YutingPKU / AnalysisPipeline-NGS
  ☆12Updated 4 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• plantformatics / Socrates
  ☆23Updated 8 months ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆33Updated 6 months ago
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆10Updated 4 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 6 months ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆21Updated 5 years ago
• dxsbiocc / ggideogram
  ggideogram is a ggplot2 extension package for drawing chromosome diagrams
  ☆15Updated 11 months ago
• Aufiero / circRNAprofiler
  ☆11Updated 6 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆19Updated 2 weeks ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• shuzhangcourage / HiC-data-analysis
  General analysis of HiC data, including compartment A/B, domains and loops.
  ☆14Updated 2 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 2 weeks ago
• dozmorovlab / multiHiCcompare
  Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
  ☆10Updated 3 years ago
• ClarkLaboratory / IsoVis
  IsoVis enables fast and informative visualization of isoform structures and expression levels.
  ☆12Updated 3 weeks ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• Xinglab / rMATS-long
  ☆34Updated last week
• RitchieLabIGH / IRFinder
  ☆19Updated 2 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆15Updated 3 months ago