sunyumail93 / PipeRiboseqLinks
A comprehensive pipeline for Ribo-seq data analysis
☆10Updated last year
Alternatives and similar repositories for PipeRiboseq
Users that are interested in PipeRiboseq are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆20Updated 6 years ago
- Extract Sequence from Genome According to Annotation File☆34Updated 2 months ago
- ☆12Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆25Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated 2 months ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- ☆28Updated 6 months ago
- ☆26Updated 3 years ago
- ☆17Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆10Updated last month
- ☆23Updated 4 years ago
- ☆13Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- ☆18Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 3 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Micro DNA identification☆23Updated 3 years ago
- ☆20Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago