mkumar45 / syngeneic_scRNAseq
☆10Updated 6 years ago
Alternatives and similar repositories for syngeneic_scRNAseq:
Users that are interested in syngeneic_scRNAseq are comparing it to the libraries listed below
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆39Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 6 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 7 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- ☆30Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- SCDC☆44Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- ☆13Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated last month
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆42Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆26Updated 5 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 3 months ago
- Gene group activity utility functions for Scanpy☆67Updated last month
- Accurate and fast cell marker gene identification with COSG☆41Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆39Updated last year
- The scripts used for analyzing JAX mouse dataset☆22Updated 3 months ago