gsneha26 / urWGS
Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
☆19Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for urWGS
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Master of Pores 2☆23Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆21Updated last year
- A tutorial on structural variant calling for short read sequencing data☆26Updated last month
- Digenome-toolkit ver2.☆15Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- A tool to detect structural variant☆18Updated last year
- ☆27Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- ☆15Updated 7 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆22Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- ☆21Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- ☆29Updated this week
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- alternative splicing analysis pipeline☆17Updated 3 years ago