Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
☆18Jun 28, 2024Updated 2 years ago
Alternatives and similar repositories for urWGS
Users that are interested in urWGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Oct 26, 2026Updated last week
- reference implementation of GA4GH WGS Quality Control Standards☆12Oct 20, 2026Updated 2 weeks ago
- CADD-SV – a framework to score the effect of structural variants☆23Oct 22, 2026Updated last week
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- WDL pipelines for running regenie☆12Oct 9, 2026Updated 3 weeks ago
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 6 years ago
- The modern argument parser for c++ tools☆11Updated this week
- ☆20Nov 30, 2023Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- ☆11Feb 16, 2023Updated 3 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- ☆28Updated this week
- Curated list of resources for variant prioritization☆16Nov 18, 2025Updated 11 months ago
- ☆10Mar 11, 2025Updated last year
- Fast SAM/BAM sorter.☆10Updated this week
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago
- ☆12Sep 27, 2023Updated 3 years ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 10 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Nov 17, 2020Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆40Oct 27, 2026Updated last week
- LAAVA: Long-read AAV Analysis☆13Oct 27, 2026Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Sep 27, 2023Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆26Mar 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- R package for transcriptomic biological age analysis☆29Sep 29, 2026Updated last month
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 11 months ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- ☆24Feb 22, 2023Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- A versatile compressor of third generation sequencing reads.☆53Mar 24, 2024Updated 2 years ago