signaturescience / skaterLinks
SKATE R Utilities
☆10Updated last year
Alternatives and similar repositories for skater
Users that are interested in skater are comparing it to the libraries listed below
Sorting:
- Kinship In Mixed Model Analysis of RNA-seq☆13Updated 7 months ago
- GWAS and rare variants tests at high speed using regenie☆16Updated last month
- ☆29Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- QTL mapping in outcrossing species using CIM☆10Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- ☆12Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 11 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- End-guided RNA assembler☆15Updated 3 weeks ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆10Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated 2 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- ☆14Updated last month
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 10 months ago
- ☆18Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆14Updated 3 months ago
- ☆23Updated 3 weeks ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated 2 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago
- ☆10Updated 6 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago