PMBio / limix
We have moved to https://github.com/limix/limix.
☆24Updated 7 years ago
Alternatives and similar repositories for limix:
Users that are interested in limix are comparing it to the libraries listed below
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- ☆19Updated 7 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- RSS: Regression with Summary Statistics☆50Updated 6 months ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated last year
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆25Updated 5 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- software package for integrative genetic association analysis☆34Updated last year
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 5 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Code for performing PCA followed by CCA☆18Updated 6 years ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Linear mixed model for genomic analyses.☆104Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago