Fast Inference of Networks from Directed Regulations
☆23Dec 7, 2023Updated 2 years ago
Alternatives and similar repositories for findr
Users that are interested in findr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated last month
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆39Aug 16, 2017Updated 8 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- ☆17May 15, 2024Updated 2 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Code for implementing Mendelian randomization investigations☆21Nov 9, 2015Updated 10 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- ☆45Jul 7, 2016Updated 10 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Jan 6, 2023Updated 3 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32May 22, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python version of Factored Spectrally Transformed Linear Mixed Models☆55Jun 2, 2025Updated last year
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated 2 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 9 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆97Jul 21, 2025Updated last year
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆111Dec 16, 2022Updated 3 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Python module for the easy handling and analysis of DNase-seq data☆38Jul 18, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A repo for implementation of Graph features autoencoder for expression values prediction and imputation☆18May 11, 2021Updated 5 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated 10 months ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- Implementation of Selective Clustering Annotated using Modes of Projections☆11May 19, 2020Updated 6 years ago
- parallel differential expression for single-cell perturbation sequencing☆25Jul 14, 2026Updated last week
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 6 months ago