lingfeiwang / findrLinks
Fast Inference of Networks from Directed Regulations
☆22Updated 2 years ago
Alternatives and similar repositories for findr
Users that are interested in findr are comparing it to the libraries listed below
Sorting:
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- ☆21Updated 8 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Variant impact phenotyping using Perturb-seq☆10Updated last year
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Updated 5 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 8 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- This repository is retired software☆13Updated 10 years ago
- ☆20Updated 4 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- ☆29Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆15Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 4 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 6 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year