Alternatives and similar repositories for findr:

Users that are interested in findr are comparing it to the libraries listed below

• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• bioFAM / slalom
  ☆28Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 9 months ago
• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated 2 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated 10 months ago
• thomsonlab / popalign
  ☆11Updated 3 years ago
• CHPGenetics / GMM-Demux
  ☆14Updated last year
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• vahuynh / dynGENIE3
  Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
  ☆23Updated last year
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• altoslabs / perturbench
  ☆23Updated 2 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 4 months ago
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆15Updated 5 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 2 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 4 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated last week