Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mostly mass cytometry) data.
☆12Aug 30, 2021Updated 5 years ago
Alternatives and similar repositories for VoPo
Users that are interested in VoPo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆23Jun 17, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Oct 23, 2026Updated last week
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- ☆15Jan 16, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- ☆27Jun 5, 2025Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- ☆13Dec 14, 2023Updated 2 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆21Apr 28, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆25Jul 14, 2026Updated 3 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- ☆28May 8, 2021Updated 5 years ago
- ☆16Jul 9, 2024Updated 2 years ago
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆100Nov 30, 2023Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago