Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mostly mass cytometry) data.
☆12Aug 30, 2021Updated 4 years ago
Alternatives and similar repositories for VoPo
Users that are interested in VoPo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 3 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆23Jun 17, 2021Updated 5 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆25Jul 14, 2026Updated 3 weeks ago
- ☆16Jul 9, 2024Updated 2 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Feb 4, 2024Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- code for tutorials, office hours, and other help i've given☆13Jun 4, 2025Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 4 months ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Brings SingleCellExperiment objects to the tidyverse☆37Jul 20, 2026Updated 3 weeks ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 5 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆105Apr 16, 2026Updated 3 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month