guokai8 / bioAnnoLinks
Build Annotation package by using information from KEGG, NCBI, Ensembl
☆15Updated 2 years ago
Alternatives and similar repositories for bioAnno
Users that are interested in bioAnno are comparing it to the libraries listed below
Sorting:
- an R/Shiny application for interactive creation of Circos plot☆50Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 7 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Updated last year
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Updated 10 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Evolutionary Transcriptomics with R☆49Updated last month
- ☆38Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Plant small RNA target prediction tool☆26Updated 9 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- GO KEGG annotation☆38Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Frequently used commands in Bioinformatics☆21Updated 2 months ago
- ☆61Updated last year
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- A simple plot library☆52Updated 8 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated 8 months ago
- lncRNA-screen☆25Updated 8 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- iTAK☆45Updated last year