Alternatives and similar repositories for TRACERx-PHLEX

Users that are interested in TRACERx-PHLEX are comparing it to the libraries listed below

• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆25Updated 4 months ago
• loicchadoutaud / sCellST
  ☆12Updated 5 months ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆12Updated this week
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆26Updated 2 weeks ago
• ElementoLab / utag
  ☆38Updated last year
• dpeerlab / ENVI
  ☆49Updated 2 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 3 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated last month
• YiLab-SC / scHolography
  ☆11Updated last year
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆82Updated last year
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆13Updated last year
• AI4SCR / ATHENA
  ☆34Updated 3 weeks ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 3 months ago
• Tang-Lab-super / ciTLSs
  Cross-modal Identification of Tertiary Lymphoid Structures
  ☆17Updated last year
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆12Updated 6 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated 3 weeks ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆24Updated 3 months ago
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆15Updated last week
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 5 months ago
• ekvall93 / ELD
  ☆31Updated 7 months ago
• Zaoqu-Liu / MOFS
  Multimodality Fusion Subtyping (Nature Communications)
  ☆24Updated 3 months ago
• seqscope / ficture
  ☆36Updated this week
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 9 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆20Updated 2 months ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆15Updated 3 years ago
• LiHongCSBLab / SOAPy
  ☆31Updated 5 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• Banovich-Lab / Spatial_PF
  ☆29Updated 2 weeks ago