Alternatives and similar repositories for TRACERx-PHLEX

Users that are interested in TRACERx-PHLEX are comparing it to the libraries listed below

• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆26Updated 8 months ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆14Updated 4 months ago
• loicchadoutaud / sCellST
  ☆13Updated 3 weeks ago
• ElementoLab / utag
  ☆39Updated last year
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆32Updated 4 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• YiLab-SC / scHolography
  ☆11Updated last year
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆12Updated last year
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆33Updated 7 months ago
• dpeerlab / ENVI
  ☆50Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• GuangyuWangLab2021 / Thor
  Cell level integrated analysis of tissue histology and spatial transcriptomics
  ☆26Updated last month
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 3 months ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆25Updated 7 months ago
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆13Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• seqscope / ficture
  ☆41Updated last month
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆91Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆66Updated 5 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 9 months ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆28Updated 7 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 9 months ago
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆63Updated last year
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆29Updated last year
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago