FrancisCrickInstitute / TRACERx-PHLEX

Related projects ⓘ

Alternatives and complementary repositories for TRACERx-PHLEX

• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆18Updated 2 months ago
• whwanglab / PDAC
  ☆10Updated 2 years ago
• TrigosTeam / SPIAT
  ☆21Updated 2 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 3 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆23Updated 9 months ago
• walsh-quail-labs / IMC_Brain
  ☆18Updated last year
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆14Updated 2 months ago
• ventolab / HGDA
  ☆21Updated 5 months ago
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆14Updated 8 months ago
• tallulandrews / LiverMap2.0
  ☆14Updated 11 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆21Updated 4 years ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆12Updated 3 years ago
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• sggao / cellsnap
  CellSNAP: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated last month
• ElementoLab / utag
  ☆33Updated 7 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆25Updated last year
• walsh-quail-labs / IMC-Lung
  ☆16Updated last year
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 6 months ago
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆15Updated last month
• shenglinmei / ProstateCancerAnalysis
  ☆15Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 3 months ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆21Updated 2 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆15Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆13Updated last week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated last week
• ekvall93 / ELD
  ☆25Updated 6 months ago
• guangchunhan / LUAD_Code
  ☆13Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆14Updated 10 months ago