YangLabHKUST / STitch3DLinks
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
☆67Updated last year
Alternatives and similar repositories for STitch3D
Users that are interested in STitch3D are comparing it to the libraries listed below
Sorting:
- ☆51Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 7 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- ☆62Updated 2 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Spatial direct messaging detected by bivariate Moran☆29Updated 2 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year
- ☆55Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- CAST package☆40Updated 11 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- ☆59Updated this week
- ☆52Updated 4 years ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆105Updated 3 months ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- ☆46Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated this week
- ☆56Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆46Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆120Updated 4 months ago
- ☆45Updated 2 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated last week