Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
☆72Nov 20, 2023Updated 2 years ago
Alternatives and similar repositories for STitch3D
Users that are interested in STitch3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- Cross-population analysis using GWAS summary statistics☆20Jun 25, 2024Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆18Apr 20, 2024Updated 2 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Jan 25, 2023Updated 3 years ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 3 months ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- ☆65Jul 23, 2024Updated 2 years ago
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆17Oct 4, 2024Updated last year
- This is the code used for the paper "PMGT-VR: A decentralized proximal-gradient algorithmic framework with variance reduction", prepint.☆15Jul 2, 2022Updated 4 years ago
- ☆12May 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- CAST package☆43Oct 26, 2024Updated last year
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated last month
- ☆10Jul 8, 2022Updated 4 years ago
- ☆35Dec 22, 2024Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- Deep Generative Learning via Schrödinger Bridge☆25Nov 1, 2021Updated 4 years ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆93Jun 24, 2024Updated 2 years ago
- R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments☆16Mar 6, 2025Updated last year
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆44Aug 28, 2026Updated 3 weeks ago
- comseg☆24Feb 6, 2025Updated last year
- Causal discovery of gene regulatory programs from single-cell genomics☆23Sep 5, 2025Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- overview of spatial datasets☆79Sep 2, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jan 21, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆48May 31, 2024Updated 2 years ago
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆220Aug 24, 2026Updated 3 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆46Feb 19, 2026Updated 7 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year