YangLabHKUST / STitch3DLinks
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
☆66Updated last year
Alternatives and similar repositories for STitch3D
Users that are interested in STitch3D are comparing it to the libraries listed below
Sorting:
- ☆50Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆90Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- ☆58Updated 3 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆104Updated last month
- End-to-end analysis of spatial multi-omics data☆90Updated 2 weeks ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- ☆55Updated last year
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆53Updated this week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆52Updated 4 years ago
- CAST package☆40Updated 9 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆55Updated this week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆66Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 6 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 4 months ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- ☆20Updated 4 months ago
- ☆59Updated 11 months ago
- ☆46Updated last year
- data for spacejam2☆17Updated 3 years ago