zsteve / StationaryOTLinks
Dynamic inference from single-cell snapshots by optimal transport
☆19Updated last year
Alternatives and similar repositories for StationaryOT
Users that are interested in StationaryOT are comparing it to the libraries listed below
Sorting:
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 3 months ago
- Global Waddington-OT☆23Updated 2 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated last year
- ☆10Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆15Updated 3 years ago
- ☆26Updated 8 months ago
- ☆16Updated 3 years ago
- Code and example of the D-SPIN framework☆22Updated last week
- Alignment of spatial genomics data using deep Gaussian processes☆26Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 4 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- ☆26Updated last year
- ☆15Updated 3 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Updated last year
- Code, data and analysis for moslin.☆12Updated 8 months ago
- Simple scVI implementation☆11Updated last week
- Git Repo for simulating Boolean Models☆34Updated 11 months ago
- ☆14Updated 2 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Learning meaningful representations of genes☆17Updated 7 months ago
- Tutorials on using latest dynamo package☆24Updated last week