zsteve / StationaryOT
Dynamic inference from single-cell snapshots by optimal transport
☆19Updated last year
Alternatives and similar repositories for StationaryOT:
Users that are interested in StationaryOT are comparing it to the libraries listed below
- ☆10Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 months ago
- Global Waddington-OT☆23Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- ☆15Updated 3 years ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- ☆45Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- Test genes for Spatial Variation☆14Updated 4 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated 10 months ago
- Git Repo for simulating Boolean Models☆34Updated 10 months ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- ☆12Updated last month
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- ☆26Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 4 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Tutorials on using latest dynamo package☆24Updated 5 months ago
- Functional and Learnable Cell dynamicS☆15Updated 2 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 2 months ago