zsteve / StationaryOTLinks
Dynamic inference from single-cell snapshots by optimal transport
☆19Updated last year
Alternatives and similar repositories for StationaryOT
Users that are interested in StationaryOT are comparing it to the libraries listed below
Sorting:
- Global Waddington-OT☆23Updated 9 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- ☆17Updated 4 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Code, data and analysis for moslin.☆15Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Simple scVI implementation☆12Updated last month
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 10 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- ☆26Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13Updated last year
- ☆26Updated last year
- ☆46Updated 5 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 3 years ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- Tutorials on using latest dynamo package☆26Updated 3 weeks ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Code and example of the D-SPIN framework☆24Updated this week
- A simulator for single-cell expression data guided by gene regulatory networks☆73Updated last year
- Learning meaningful representations of genes☆20Updated 6 months ago
- ☆40Updated 2 weeks ago