Alternatives and similar repositories for StationaryOT

Users that are interested in StationaryOT are comparing it to the libraries listed below

• zsteve / gWOT
  Global Waddington-OT
  ☆24Updated 6 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 7 months ago
• cliffzhou92 / MuTrans-release
  ☆16Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• YosefLab / SymSim
  ☆26Updated last year
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated last year
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆60Updated 2 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated this week
• AllonKleinLab / cospar
  ☆26Updated last year
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 3 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆22Updated last year
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 10 months ago
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated 2 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆35Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆18Updated 4 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 4 years ago
• YosefLab / velovi
  ☆40Updated last week
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆33Updated 6 months ago