Dynamic inference from single-cell snapshots by optimal transport
β20Mar 14, 2024Updated last year
Alternatives and similar repositories for StationaryOT
Users that are interested in StationaryOT are comparing it to the libraries listed below
Sorting:
- π«robabilistic modeling of RNA velocity ⬱β49Feb 16, 2026Updated 2 weeks ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"β13Apr 23, 2024Updated last year
- The scripts used for the analyses in TOME projectβ24Nov 28, 2025Updated 3 months ago
- β10Sep 20, 2022Updated 3 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations fβ¦β13Jul 19, 2021Updated 4 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inferenceβ27Nov 12, 2024Updated last year
- Spatial RNA velocityβ10Oct 3, 2024Updated last year
- Code, data and analysis for moslin.β15Oct 7, 2024Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 7 months ago
- β17Nov 13, 2021Updated 4 years ago
- Modeling Latent Flow Structure using Hodge Decompositionβ16Mar 13, 2025Updated 11 months ago
- Regulatory networks with Direct Informationβ17Oct 14, 2019Updated 6 years ago
- β19Aug 20, 2024Updated last year
- β44May 23, 2025Updated 9 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""β40Feb 19, 2026Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.β86Mar 20, 2025Updated 11 months ago
- Spatial Single Cell transcriptomic libraryβ19Jan 15, 2026Updated last month
- RNA-velocity informed embeddings for visualizing cellular trajectoriesβ44Sep 5, 2022Updated 3 years ago
- β52Oct 9, 2025Updated 4 months ago
- β27Jun 4, 2023Updated 2 years ago
- β20May 30, 2022Updated 3 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlasβ21Jul 3, 2022Updated 3 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstructionβ98Feb 5, 2026Updated last month
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasisβ23Jun 5, 2020Updated 5 years ago
- RNA velocity validationβ22Mar 16, 2022Updated 3 years ago
- β25Aug 24, 2023Updated 2 years ago
- Landscape Single Cell Entropyβ21Aug 24, 2020Updated 5 years ago
- π¦ Tumor growth simulation in C++/Rβ19Dec 30, 2025Updated 2 months ago
- Global Waddington-OTβ23Mar 25, 2025Updated 11 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"β23Feb 14, 2021Updated 5 years ago
- R implementation of GeneTrajectoryβ68Apr 5, 2024Updated last year
- A software package for analyzing snapshots of developmental processesβ156Sep 15, 2022Updated 3 years ago
- Learn single-cell dynamics using neural differential equationsβ63Jan 6, 2026Updated 2 months ago
- Multiscale simulation of multi-cellular systemβ28Jul 31, 2020Updated 5 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)β11Mar 2, 2023Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.β224Dec 26, 2025Updated 2 months ago
- Python implementation of Gene Trajectoryβ30Sep 4, 2024Updated last year
- Tools for assessing clustering robustnessβ31Jan 29, 2026Updated last month
- β31Aug 2, 2023Updated 2 years ago