Dynamic inference from single-cell snapshots by optimal transport
β21Mar 14, 2024Updated 2 years ago
Alternatives and similar repositories for StationaryOT
Users that are interested in StationaryOT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The scripts used for the analyses in TOME projectβ25Nov 28, 2025Updated 6 months ago
- π«robabilistic modeling of RNA velocity ⬱β49Updated this week
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"β13Apr 23, 2024Updated 2 years ago
- Spatial RNA velocityβ10Oct 3, 2024Updated last year
- β10Sep 20, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial Single Cell transcriptomic libraryβ21Jan 15, 2026Updated 5 months ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations fβ¦β14Jul 19, 2021Updated 4 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inferenceβ28Nov 12, 2024Updated last year
- Regulatory networks with Direct Informationβ18Oct 14, 2019Updated 6 years ago
- Modeling Latent Flow Structure using Hodge Decompositionβ17Mar 13, 2025Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""β40Feb 19, 2026Updated 4 months ago
- Global Waddington-OTβ23Mar 25, 2025Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectoriesβ45Sep 5, 2022Updated 3 years ago
- β21Aug 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- β27Jun 4, 2023Updated 3 years ago
- β17Nov 13, 2021Updated 4 years ago
- β29Sep 4, 2023Updated 2 years ago
- RNA velocity validationβ22Mar 16, 2022Updated 4 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlasβ21Jul 3, 2022Updated 3 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking softwareβ10May 17, 2017Updated 9 years ago
- Tools for assessing clustering robustnessβ32Apr 2, 2026Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.β87Mar 20, 2025Updated last year
- β26Aug 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Landscape Single Cell Entropyβ23Aug 24, 2020Updated 5 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)β11Mar 2, 2023Updated 3 years ago
- R implementation of GeneTrajectoryβ71May 9, 2026Updated last month
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 10 months ago
- β11Dec 8, 2023Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.β258May 14, 2026Updated last month
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markovβ¦β11Sep 25, 2025Updated 8 months ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787β10May 10, 2021Updated 5 years ago
- Python implementation of Gene Trajectoryβ30Sep 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A 450k tutorial in the form of an R packageβ12Jul 5, 2016Updated 9 years ago
- β53Oct 9, 2025Updated 8 months ago
- ActiveDriverDBβ12May 1, 2023Updated 3 years ago
- β12Apr 13, 2020Updated 6 years ago
- Repo hosting the MetFrag websiteβ11Apr 6, 2026Updated 2 months ago
- A curated list of awesome deep learning applications in the field of computational biologyβ11Aug 3, 2016Updated 9 years ago
- β12Nov 24, 2022Updated 3 years ago