zsteve / StationaryOTLinks
Dynamic inference from single-cell snapshots by optimal transport
☆20Updated last year
Alternatives and similar repositories for StationaryOT
Users that are interested in StationaryOT are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 11 months ago
- ☆17Updated 4 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Updated 3 years ago
- Global Waddington-OT☆23Updated 10 months ago
- Code, data and analysis for moslin.☆15Updated last year
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- ☆26Updated 2 years ago
- ☆26Updated last year
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆47Updated 6 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 3 weeks ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Updated last year
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Tutorials on using latest dynamo package☆26Updated last month
- Simple scVI implementation☆12Updated last week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Updated 3 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- spatial transcriptome, single cell☆73Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Updated 3 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago