A toolkit of spatial transcriptomic analysis.
☆280Apr 7, 2026Updated last month
Alternatives and similar repositories for Stereopy
Users that are interested in Stereopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆191Sep 18, 2024Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆337Feb 25, 2026Updated 2 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 11 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆247May 5, 2026Updated 2 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆457Jan 22, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial alignment of single cell transcriptomic data.☆365Jul 1, 2025Updated 10 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆434Updated this week
- ☆40Nov 17, 2022Updated 3 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆207Oct 20, 2025Updated 7 months ago
- Spatial Single Cell Analysis in Python☆571Updated this week
- ☆150Mar 20, 2026Updated 2 months ago
- Spatial omics analysis toolbox☆374May 15, 2026Updated last week
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆473Mar 13, 2026Updated 2 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆495Apr 23, 2026Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆143Feb 20, 2025Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆261Feb 9, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Single-cell epigenomics analysis tools☆319Mar 13, 2026Updated 2 months ago
- ☆129Mar 27, 2022Updated 4 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- BANKSY: spatial clustering☆147May 2, 2026Updated 2 weeks ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆989Updated this week
- ☆62Jul 23, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆438Apr 11, 2026Updated last month
- A tool for semi-automatic cell type classification☆476Updated this week
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432May 11, 2026Updated last week
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆21Apr 27, 2025Updated last year