Alternatives and similar repositories for Stereopy

Users that are interested in Stereopy are comparing it to the libraries listed below

• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆439Updated last year
• STOmics / SAW
  ☆170Updated last year
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆210Updated last year
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆369Updated 3 weeks ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆404Updated this week
• dmcable / spacexr
  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …
  ☆394Updated 2 months ago
• scverse / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆286Updated 3 weeks ago
• IanevskiAleksandr / sc-type
  ☆275Updated 10 months ago
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆234Updated 7 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆166Updated 2 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆221Updated last week
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆354Updated last month
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆231Updated 2 months ago
• BayraktarLab / cell2location
  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
  ☆377Updated 2 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆167Updated 5 months ago
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆220Updated this week
• navinlabcode / copykat
  ☆251Updated last year
• Teichlab / cellphonedb
  ☆358Updated 3 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆212Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆247Updated last year
• Winnie09 / GPTCelltype
  ☆208Updated last year
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆215Updated 6 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆291Updated 2 years ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆430Updated 3 months ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆293Updated 2 years ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆314Updated 6 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆291Updated 2 years ago
• sunduanchen / Scissor
  Scissor package
  ☆236Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆185Updated last month