jonathancrabtree / CircleatorLinks
Flexible circular visualization of genome-associated data with BioPerl and SVG.
☆47Updated 6 years ago
Alternatives and similar repositories for Circleator
Users that are interested in Circleator are comparing it to the libraries listed below
Sorting:
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Fully automated generation of UCSC assembly hubs☆34Updated 10 months ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆53Updated 4 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year