hitbc / deSAMBA
deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
☆10Updated 10 months ago
Alternatives and similar repositories for deSAMBA:
Users that are interested in deSAMBA are comparing it to the libraries listed below
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆12Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Find Unique genomic Regions☆29Updated this week
- ☆32Updated 2 years ago
- ☆28Updated last year
- comparative genome dot plot viewer☆9Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated this week
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 5 months ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated last year
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- ☆41Updated 3 weeks ago
- ☆29Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 3 years ago
- ☆15Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago