hitbc / deSAMBA

Related projects: ⓘ

• ErasmusMC-Bioinformatics / WeFaceNano
  Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
  ☆12Updated 3 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆15Updated 5 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• SR-Martin / alvis
  ☆19Updated 9 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆21Updated 5 months ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• lh3 / gffio
  ☆31Updated last year
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆19Updated 3 months ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆12Updated last week
• dfguan / cgplot
  comparative genome dot plot viewer
  ☆9Updated 5 years ago
• whatshap / whatshap-gh-backup
  ☆17Updated this week
• mdcao / npReader
  Read nanopore sequence reads in real-time
  ☆13Updated 7 years ago
• DixianZhu / deBWT
  A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
  ☆13Updated 8 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆13Updated 2 years ago
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated 10 months ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 4 years ago
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 4 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆14Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 4 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 5 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated last year