price0416 / DEvis
DEvis: an R package for aggregation and visualization of differential expression data
☆20Updated 3 years ago
Related projects: ⓘ
- RNA-seq data comprehensive data analysis toolbox☆18Updated last year
- Nanopore Real-Time Analysis Tool☆13Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 5 months ago
- ☆25Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- interactive plots for differential expression analysis☆25Updated 2 weeks ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆9Updated last month
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆18Updated last year
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Genomic data interpretation and visualization Workshop☆17Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆26Updated this week
- ☆13Updated 9 months ago
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python☆16Updated 7 years ago
- supplementary tables and files☆10Updated 11 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Demonstrating best practices for bioinformatics command line tools☆25Updated 4 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- ☆18Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆26Updated 4 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 4 years ago
- ☆15Updated this week
- Python wrapper for ipath3☆10Updated 11 months ago