DEvis: an R package for aggregation and visualization of differential expression data
☆19Dec 9, 2020Updated 5 years ago
Alternatives and similar repositories for DEvis
Users that are interested in DEvis are comparing it to the libraries listed below
Sorting:
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- Application for hosting gene expression and ontology data with Shiny☆17Jan 8, 2018Updated 8 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated last month
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆11Feb 21, 2026Updated 2 weeks ago
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 2 months ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Aug 26, 2021Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- ViroBLAST standalone package☆16Apr 4, 2024Updated last year
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- ☆15Feb 19, 2026Updated 2 weeks ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Feb 12, 2026Updated 3 weeks ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- ☆17Jul 8, 2024Updated last year
- R interface to 'Gos'☆38Feb 23, 2023Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆25Feb 5, 2026Updated last month
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated last month
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Jun 18, 2019Updated 6 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 6 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 5 months ago
- This is a generic Python client for BioThings APIs☆19Updated this week
- Short course describing the considerations for a successful RNA-seq experiment☆19Jan 13, 2022Updated 4 years ago
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- The k-nearest neighbors algorithm in Julia☆22Feb 9, 2022Updated 4 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 4 years ago
- Meta package for processing and visualizing tree with data☆29Nov 1, 2021Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Sep 10, 2014Updated 11 years ago
- Glimma R package☆50Sep 2, 2024Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆26Jun 9, 2020Updated 5 years ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆31Sep 17, 2024Updated last year