Identifying ViRal and Circular content in metAgenomes
☆14Dec 13, 2018Updated 7 years ago
Alternatives and similar repositories for VRCA
Users that are interested in VRCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- A genome browser in your Jupyter notebook☆31Mar 13, 2026Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 11 months ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 4 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆83Jun 17, 2024Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Jul 22, 2026Updated 3 weeks ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Jan 11, 2024Updated 2 years ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- ☆16Aug 10, 2026Updated last week
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- KBase distribution module for RASTtk.☆14Sep 14, 2020Updated 5 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 3 months ago
- ☆20Jan 12, 2017Updated 9 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Jun 18, 2019Updated 7 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆352Jul 16, 2026Updated last month
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆107Aug 11, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Bioinformatics Tools☆91Aug 6, 2026Updated last week
- ☆24Feb 7, 2022Updated 4 years ago
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated 2 years ago