alexcritschristoph / VRCA
Identifying ViRal and Circular content in metAgenomes
☆11Updated 6 years ago
Alternatives and similar repositories for VRCA:
Users that are interested in VRCA are comparing it to the libraries listed below
- A selection of short scripts for analyzing microbial genomes☆14Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Quickly get the taxonomy of a genome☆10Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- strain-level analysis tools☆36Updated 5 months ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆22Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 weeks ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 11 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Bacterial Operon Finder for Functional Organization☆14Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated last month
- De novo VIral Genome Annotator☆21Updated 6 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 4 months ago