Identifying ViRal and Circular content in metAgenomes
☆14Dec 13, 2018Updated 7 years ago
Alternatives and similar repositories for VRCA
Users that are interested in VRCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- A genome browser in your Jupyter notebook☆31Mar 13, 2026Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆25Jul 22, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆16Sep 8, 2025Updated last year
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 6 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆84Jun 17, 2024Updated 2 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- StrainEst - abundance estimation of strains☆19Jan 17, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Jan 11, 2024Updated 2 years ago
- Visualization of the pan-genome output by panX☆70Jun 16, 2025Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- ☆16Aug 10, 2026Updated 2 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- ☆11Sep 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 4 months ago
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 5 months ago
- Rapid comparison and dereplication of genomes☆359Oct 9, 2026Updated last week
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Jan 12, 2017Updated 9 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Jun 18, 2019Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Apr 22, 2021Updated 5 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Aug 27, 2019Updated 7 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- strain-level analysis tools☆40Oct 21, 2024Updated last year