bioinf / SibeliaLinks
Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.
☆67Updated 4 years ago
Alternatives and similar repositories for Sibelia
Users that are interested in Sibelia are comparing it to the libraries listed below
Sorting:
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 4 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- ☆52Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Synteny Imager☆63Updated 10 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- ☆36Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆33Updated 7 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago
- ☆44Updated 8 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- de.NBI Nanopore Training Course☆20Updated 2 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago