Alternatives and similar repositories for AvxWindowFmIndex:

Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below

• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last month
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆53Updated last week
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆40Updated 2 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 2 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 8 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 7 months ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 11 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated 9 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated 2 weeks ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• cschin / peregrine-2021
  ☆59Updated last year
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆65Updated 6 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• karel-brinda / NanoSim-H
  NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
  ☆17Updated 2 years ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• broadinstitute / pyfrost
  Python bindings for Bifrost with a NetworkX compatible API
  ☆28Updated last year
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated 3 weeks ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated 10 months ago