Alternatives and similar repositories for AvxWindowFmIndex

Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below

• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 8 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 2 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆55Updated 2 weeks ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆52Updated last month
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• langmead-lab / vargas
  ☆24Updated 2 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• VGP / vgp-tools
  ☆28Updated 7 months ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆55Updated last year
• Kingsford-Group / remuval
  ☆12Updated 6 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 3 weeks ago
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆51Updated last year
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆45Updated last month
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 4 months ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 6 years ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆68Updated last year
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆90Updated 6 months ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated 9 months ago
• PASSIONLab / BELLA
  BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
  ☆51Updated 3 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago