Alternatives and similar repositories for AvxWindowFmIndex:

Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below

• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 9 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 10 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆43Updated 3 months ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated last week
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 6 years ago
• VGP / vgp-tools
  ☆28Updated last month
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 3 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated last month
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated 11 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated this week
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆16Updated 3 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• Kingsford-Group / remuval
  ☆12Updated 5 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year