TravisWheelerLab / AvxWindowFmIndexLinks
A fast, AVX2 and ARM Neon accelerated FM index library
☆32Updated 6 months ago
Alternatives and similar repositories for AvxWindowFmIndex
Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below
Sorting:
- Efficient, parallel compression for terabyte-scale data☆46Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆28Updated 2 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 3 months ago
- ☆17Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 2 months ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- De Bruijn graph representation in low memory☆36Updated 11 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- GBWT-based handle graph☆31Updated 3 months ago
- ☆12Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- GBWT in Rust☆43Updated 2 months ago
- Index kmtricks bf matrices☆44Updated 6 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆59Updated this week