TravisWheelerLab / AvxWindowFmIndexLinks
A fast, AVX2 and ARM Neon accelerated FM index library
☆32Updated 5 months ago
Alternatives and similar repositories for AvxWindowFmIndex
Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆12Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ☆28Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- ☆17Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- De Bruijn graph representation in low memory☆36Updated 10 months ago
- Efficient, parallel compression for terabyte-scale data☆46Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Index kmtricks bf matrices☆44Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Construct a Physical Map from Linked Reads☆18Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 2 months ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Benchmarking pairwise aligners☆36Updated 3 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Library of sketching functions used by PopPUNK☆31Updated 2 months ago
- 1-code framework: docs, C-library, and tools☆17Updated 4 months ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago