TravisWheelerLab / AvxWindowFmIndexLinks
A fast, AVX2 and ARM Neon accelerated FM index library
☆32Updated 7 months ago
Alternatives and similar repositories for AvxWindowFmIndex
Users that are interested in AvxWindowFmIndex are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆90Updated 3 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Index kmtricks bf matrices☆45Updated 8 months ago
- ☆25Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- ☆28Updated 3 months ago
- GBWT-based handle graph☆31Updated last month
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Updated 11 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Bidirectional WFA (Paper)☆47Updated last year
- ☆17Updated 2 years ago