UMNFuN / FUNGuildLinks
FUNGuild: parsing OTUs into functional guilds
☆123Updated last year
Alternatives and similar repositories for FUNGuild
Users that are interested in FUNGuild are comparing it to the libraries listed below
Sorting:
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆90Updated 2 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆170Updated last month
- Microbial ecological network visualization clustering☆133Updated 3 weeks ago
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 3 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated 4 months ago
- dada2 formatted nifH database☆13Updated last year
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- Fast expectation maximization for microbial source tracking☆135Updated last year
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆179Updated last month
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆84Updated last week
- ☆79Updated 2 years ago
- ☆14Updated 11 years ago
- ☆12Updated last year
- ☆51Updated 4 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 3 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆50Updated 4 years ago
- SourceTracker2☆81Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated 3 months ago
- Integrated Network Analysis Pipeline☆18Updated 11 months ago
- Network construction, analysis, and comparison for microbial compositional data☆171Updated 8 months ago
- Import qiime2 artifacts to R☆173Updated 11 months ago
- A short tutorial for Tax4Fun2☆23Updated last year