UMNFuN / FUNGuildLinks
FUNGuild: parsing OTUs into functional guilds
☆119Updated last year
Alternatives and similar repositories for FUNGuild
Users that are interested in FUNGuild are comparing it to the libraries listed below
Sorting:
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆81Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆160Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆143Updated last week
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- Microbial ecological network visualization clustering☆121Updated 4 months ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆172Updated 2 months ago
- Import qiime2 artifacts to R☆172Updated 7 months ago
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- dada2 formatted nifH database☆12Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆42Updated 3 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last year
- ☆12Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated last month
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆48Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 4 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Fast expectation maximization for microbial source tracking☆126Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- ☆14Updated 10 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 8 months ago
- R package for microbiome biomarker discovery☆186Updated 4 months ago
- ☆76Updated last year
- A comprehensive R package for deep mining microbiome☆190Updated 2 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago