qiita-spots / qiitaLinks
Qiita - A multi-omics databasing effort
☆125Updated last week
Alternatives and similar repositories for qiita
Users that are interested in qiita are comparing it to the libraries listed below
Sorting:
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- A user-friendly workflow for phylogenomics☆213Updated last week
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- ☆70Updated 4 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆123Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆132Updated 3 years ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- Pan-genome wide association studies☆198Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆104Updated 4 years ago
- Rapid comparison and dereplication of genomes☆294Updated last month
- DAS Tool☆150Updated last year
- Bacterial ribosomal RNA predictor☆245Updated last year
- A tool to circularize genome assemblies☆242Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆162Updated 2 weeks ago
- A robust, extensible metagenomics pipeline☆170Updated this week
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- PAired-eND Assembler for DNA sequences☆132Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago
- Bioinformatics program inStrain☆171Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- The Biological Observation Matrix (BIOM) Format Project☆94Updated last week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Updated 5 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆209Updated 9 months ago
- SEER, reimplemented in python 🐍🔮☆122Updated 2 weeks ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆89Updated 2 years ago