Alternatives and similar repositories for qiita

Users that are interested in qiita are comparing it to the libraries listed below

• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆139Updated 4 years ago
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• sanger-pathogens / pathogen-informatics-training
  ☆75Updated 4 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆98Updated 5 months ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆128Updated last year
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated this week
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆84Updated 7 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆141Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated 2 years ago
• jessieren / VirFinder
  VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
  ☆137Updated 5 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆176Updated 5 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆221Updated 2 months ago
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆137Updated 4 years ago
• alexcritschristoph / Qiime16sTutorial
  A tutorial on methods of 16S analysis with QIIME 1
  ☆70Updated 6 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆102Updated 6 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆120Updated 2 weeks ago
• bokulich-lab / RESCRIPt
  REference Sequence annotation and CuRatIon Pipeline
  ☆97Updated last week
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆82Updated 6 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆142Updated 2 weeks ago
• simroux / VirSorter
  Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
  ☆101Updated 5 years ago
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆143Updated this week
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆93Updated last year
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆158Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆162Updated last month
• ddarriba / modeltest
  Best-fit model selection
  ☆83Updated last year
• snayfach / MIDAS
  An integrated pipeline for estimating strain-level genomic variation from metagenomic data
  ☆130Updated 2 years ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆204Updated last year