qiita-spots / qiita

Related projects: ⓘ

• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆80Updated 6 years ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆197Updated last week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆132Updated 11 months ago
• sanger-pathogens / pathogen-informatics-training
  ☆68Updated 3 years ago
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆141Updated 3 years ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆145Updated last year
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆91Updated 4 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆106Updated last month
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆180Updated last month
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆199Updated 2 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆119Updated last week
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆187Updated last month
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆95Updated last year
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆142Updated last month
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆229Updated 5 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆126Updated 2 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆125Updated 4 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆249Updated 5 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆98Updated this week
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆117Updated 3 weeks ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆97Updated 5 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆218Updated last year
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆125Updated 3 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆304Updated 3 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆257Updated 10 months ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆240Updated last month
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆199Updated 9 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆147Updated 3 months ago
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆125Updated 3 weeks ago