qiita-spots / qiitaLinks
Qiita - A multi-omics databasing effort
☆127Updated 3 weeks ago
Alternatives and similar repositories for qiita
Users that are interested in qiita are comparing it to the libraries listed below
Sorting:
- ☆73Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆126Updated last year
- A robust, extensible metagenomics pipeline☆172Updated this week
- Practical, reusable scripts for bioinformatics☆101Updated 6 years ago
- PAired-eND Assembler for DNA sequences☆134Updated 4 years ago
- Short Read Sequence Typing for Bacterial Pathogens☆137Updated 4 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated 3 months ago
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- Curated Metagenomic Data of the Human Microbiome☆138Updated 3 weeks ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- MEGAN Community Edition☆72Updated last year
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆136Updated 5 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆235Updated last year
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- A user-friendly workflow for phylogenomics☆217Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- High-quality circular representations of taxonomic and phylogenetic trees☆103Updated last year
- Windowed Adaptive Trimming for fastq files using quality☆221Updated 8 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆139Updated last month
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- Antimicrobial Resistance Identification By Assembly☆179Updated last year
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆195Updated 10 months ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆113Updated this week