R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
☆537Jul 18, 2026Updated this week
Alternatives and similar repositories for vegan
Users that are interested in vegan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ggplot-based plots for vegan☆124May 22, 2026Updated last month
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 8 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆650Feb 27, 2026Updated 4 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆554Feb 13, 2026Updated 5 months ago
- microbiome R package☆318May 12, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code, unit tests, and tutorials for running PICRUSt2☆393Nov 27, 2025Updated 7 months ago
- An R package for downstream data analysis of microbiome omics data☆284Jul 11, 2026Updated last week
- Visualization and annotation of phylogenetic trees☆928Apr 29, 2026Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆174Sep 4, 2025Updated 10 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆141Apr 27, 2026Updated 2 months ago
- Dynamic and static 3D plotting for vegan☆19Mar 9, 2026Updated 4 months ago
- Code to run the shiny functions for the MASAME suite☆28Feb 4, 2020Updated 6 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 5 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆232Apr 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences☆45Mar 21, 2026Updated 4 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 10 months ago
- ☆119Jun 26, 2026Updated 3 weeks ago
- Species richness with high diversity☆68Jun 25, 2026Updated 3 weeks ago
- Pairwise multilevel comparison using adonis☆82Jun 2, 2023Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆32Mar 27, 2026Updated 3 months ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Microbiome analysis☆57Jun 18, 2026Updated last month
- a take on ordination plots using ggplot2☆67Jul 22, 2024Updated last year
- bioBakery tools for meta'omic profiling☆320Updated this week
- This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Ho…☆18Oct 29, 2025Updated 8 months ago
- Get started using the vegan package for R for multivariate data analysis and community ecology☆41Jul 8, 2020Updated 6 years ago
- FUNGuild: parsing OTUs into functional guilds☆131Apr 26, 2024Updated 2 years ago
- Easily add significance brackets to your ggplots☆614Mar 29, 2026Updated 3 months ago
- Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar☆21Jul 9, 2020Updated 6 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Jun 25, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Phylogenetic analysis in R☆215Jul 6, 2026Updated 2 weeks ago
- Ridgeline plots in ggplot2☆425Jun 18, 2026Updated last month
- Multivariate Multiscale Spatial Analysis☆42Mar 21, 2026Updated 4 months ago
- Functions for phylogenetic analyses☆36May 18, 2026Updated 2 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- Pipe-friendly Framework for Basic Statistical Tests in R☆490Jul 13, 2026Updated last week