R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
☆534Jun 23, 2026Updated last week
Alternatives and similar repositories for vegan
Users that are interested in vegan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ggplot-based plots for vegan☆124May 22, 2026Updated last month
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 4 months ago
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 7 months ago
- microbiome R package☆318May 12, 2026Updated last month
- Accurate sample inference from amplicon data with single nucleotide resolution☆552Feb 13, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for downstream data analysis of microbiome omics data☆281Jun 24, 2026Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆391Nov 27, 2025Updated 7 months ago
- Visualization and annotation of phylogenetic trees☆928Apr 29, 2026Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 9 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆138Apr 27, 2026Updated 2 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- Dynamic and static 3D plotting for vegan☆19Mar 9, 2026Updated 3 months ago
- Code to run the shiny functions for the MASAME suite☆28Feb 4, 2020Updated 6 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 29, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 10 months ago
- Species richness with high diversity☆68Updated this week
- ☆119Updated this week
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences☆45Mar 21, 2026Updated 3 months ago
- Pairwise multilevel comparison using adonis☆82Jun 2, 2023Updated 3 years ago
- a take on ordination plots using ggplot2☆67Jul 22, 2024Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- bioBakery tools for meta'omic profiling☆319Jun 24, 2026Updated last week
- Microbiome analysis☆57Jun 18, 2026Updated last week
- This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Ho…☆18Oct 29, 2025Updated 8 months ago
- Easily add significance brackets to your ggplots☆614Mar 29, 2026Updated 3 months ago
- Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar☆21Jul 9, 2020Updated 5 years ago
- FUNGuild: parsing OTUs into functional guilds☆131Apr 26, 2024Updated 2 years ago
- Ridgeline plots in ggplot2☆424Jun 18, 2026Updated last week
- Phylogenetic analysis in R☆216Jun 22, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Get started using the vegan package for R for multivariate data analysis and community ecology☆41Jul 8, 2020Updated 5 years ago
- Pipe-friendly Framework for Basic Statistical Tests in R☆487Oct 20, 2025Updated 8 months ago
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Updated this week
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆87Nov 3, 2025Updated 7 months ago
- Multivariate Multiscale Spatial Analysis☆42Mar 21, 2026Updated 3 months ago
- ggplot extension: options for tailored facets, multiple colourscales and miscellaneous☆679Oct 2, 2025Updated 8 months ago