R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
☆546Oct 10, 2026Updated this week
Alternatives and similar repositories for vegan
Users that are interested in vegan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ggplot-based plots for vegan☆126May 22, 2026Updated 4 months ago
- An R pakage to calculate diversity through Hill Numbers☆35Nov 11, 2025Updated 10 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 7 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆556Jul 31, 2026Updated 2 months ago
- microbiome R package☆319Sep 8, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- An R package for downstream data analysis of microbiome omics data☆292Sep 30, 2026Updated last week
- Visualization and annotation of phylogenetic trees☆935Sep 14, 2026Updated 3 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated 3 weeks ago
- Dynamic and static 3D plotting for vegan☆19Mar 9, 2026Updated 7 months ago
- Code to run the shiny functions for the MASAME suite☆27Feb 4, 2020Updated 6 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 8 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences☆45Mar 21, 2026Updated 6 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated last year
- ☆121Jun 26, 2026Updated 3 months ago
- Species richness with high diversity☆69Jun 25, 2026Updated 3 months ago
- Microbiome analysis☆58Updated this week
- Pairwise multilevel comparison using adonis☆82Jun 2, 2023Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆67Sep 3, 2020Updated 6 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 6 months ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- a take on ordination plots using ggplot2☆66Jul 22, 2024Updated 2 years ago
- bioBakery tools for meta'omic profiling☆323Aug 4, 2026Updated 2 months ago
- This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Ho…☆19Jul 30, 2026Updated 2 months ago
- Get started using the vegan package for R for multivariate data analysis and community ecology☆41Jul 8, 2020Updated 6 years ago
- FUNGuild: parsing OTUs into functional guilds☆135Apr 26, 2024Updated 2 years ago
- Easily add significance brackets to your ggplots☆615Mar 29, 2026Updated 6 months ago
- Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar☆21Jul 9, 2020Updated 6 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆87Sep 15, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phylogenetic analysis in R☆216Sep 23, 2026Updated 2 weeks ago
- Ridgeline plots in ggplot2☆425Jun 18, 2026Updated 3 months ago
- Multivariate Multiscale Spatial Analysis☆42Mar 21, 2026Updated 6 months ago
- ggplot extension: options for tailored facets, multiple colourscales and miscellaneous☆682Oct 2, 2025Updated last year
- Functions for phylogenetic analyses☆36May 18, 2026Updated 4 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Mar 6, 2024Updated 2 years ago
- Pipe-friendly Framework for Basic Statistical Tests in R☆494Aug 2, 2026Updated 2 months ago