joey711 / shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
☆60Updated 5 years ago
Alternatives and similar repositories for shiny-phyloseq:
Users that are interested in shiny-phyloseq are comparing it to the libraries listed below
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆36Updated 9 years ago
- a take on ordination plots using ggplot2☆64Updated 9 months ago
- fastqcr: Quality Control of Sequencing Data☆73Updated last year
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Updated 4 years ago
- R Package growthrates☆27Updated last year
- User-Friendly R Package for Supervised Machine Learning Pipelines☆58Updated 2 months ago
- ☆19Updated last year
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 9 months ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆21Updated 4 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- diversity estimation under ecological networks☆83Updated 3 weeks ago
- Species richness with high diversity☆68Updated 3 weeks ago
- Materials for Module 2 of the SISBID Workshop, Visualization of Biomedical Big Data☆25Updated 7 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last month
- STAMPS 2018 course☆16Updated 6 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆70Updated 11 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated 3 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 9 months ago
- Phylogenetic plots for R and ggplot☆27Updated 12 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆43Updated 7 years ago
- Zero-Inflated Beta Random Effect model☆30Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- Grid and ggplot2 based visualization for biological data☆112Updated last year
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆34Updated 2 months ago
- scatter pie plot☆63Updated 4 months ago