joey711 / shiny-phyloseqView external linksLinks
An interactive web application for demonstrating and using phyloseq.
☆60Jul 18, 2019Updated 6 years ago
Alternatives and similar repositories for shiny-phyloseq
Users that are interested in shiny-phyloseq are comparing it to the libraries listed below
Sorting:
- ☆13Feb 6, 2020Updated 6 years ago
- Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R☆18May 19, 2017Updated 8 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Nov 13, 2025Updated 3 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆638Apr 29, 2024Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated last month
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- ☆19Dec 15, 2020Updated 5 years ago
- This project is deprecated and no longer supported. (Google Docs-like live collaboration in Shiny)☆75Dec 15, 2023Updated 2 years ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 6 months ago
- Visualization tool for (meta)genome assembly graphs☆24Feb 10, 2026Updated last week
- Use shiny with event handlers instead of reactivity☆36Dec 16, 2022Updated 3 years ago
- ☆11Apr 5, 2021Updated 4 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month
- extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output☆37Aug 24, 2015Updated 10 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- ☆42Nov 20, 2017Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 2 months ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆10Nov 24, 2025Updated 2 months ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 2 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Overview of Interactive Reporting & Dashboards in Shiny☆11Jul 25, 2017Updated 8 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 6 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- R语言与微信公众号接口☆25Jun 13, 2022Updated 3 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Dec 15, 2020Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Sep 3, 2020Updated 5 years ago
- Shiny Web Application for Drug Target Identification with Large-Scale Public Binding Affinities Data☆11Sep 19, 2024Updated last year