HCBravoLab / metagenomeSeqLinks
Statistical analysis for sparse high-throughput sequencing
☆69Updated 8 months ago
Alternatives and similar repositories for metagenomeSeq
Users that are interested in metagenomeSeq are comparing it to the libraries listed below
Sorting:
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆23Updated 7 years ago
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated this week
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- ☆76Updated last year
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- ☆57Updated last year
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- gutSMASH☆55Updated 8 months ago
- Bioinformatics Tools☆89Updated this week