HCBravoLab / metagenomeSeqView external linksLinks
Statistical analysis for sparse high-throughput sequencing
☆71Dec 17, 2024Updated last year
Alternatives and similar repositories for metagenomeSeq
Users that are interested in metagenomeSeq are comparing it to the libraries listed below
Sorting:
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆232Jan 20, 2026Updated 3 weeks ago
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 9 years ago
- 🌈 Interactive analysis of metagenomics data☆442Sep 17, 2025Updated 4 months ago
- ☆30Sep 21, 2023Updated 2 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆35Apr 25, 2022Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 3 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 2 months ago
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Metagenome analysis pipeline☆100Jul 26, 2021Updated 4 years ago
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 3 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆638Apr 29, 2024Updated last year
- Curated Metagenomic Data of the Human Microbiome☆150Jan 21, 2026Updated 3 weeks ago
- R package for microbiome biomarker discovery☆193Feb 19, 2025Updated 11 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 2 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆229Oct 29, 2025Updated 3 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆456Feb 2, 2026Updated last week
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 3 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Jan 19, 2018Updated 8 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Oct 19, 2020Updated 5 years ago
- Bitpacked sequence trait and implementation☆16Jan 20, 2026Updated 3 weeks ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆35Feb 2, 2026Updated last week
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago