biocore / qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
☆286Updated 2 years ago
Alternatives and similar repositories for qiime:
Users that are interested in qiime are comparing it to the libraries listed below
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆271Updated 3 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆326Updated 2 weeks ago
- ☆334Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆218Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆276Updated last month
- Windowed Adaptive Trimming for fastq files using quality☆218Updated 7 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Rapid large-scale prokaryote pan genome analysis☆332Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆332Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆412Updated last year
- PAired-eND Assembler for DNA sequences☆130Updated 4 years ago
- A complete pipeline for metagenomic analysis☆392Updated this week
- a toolkit for working with Oxford nanopore data☆242Updated 2 years ago
- TransDecoder source☆284Updated 4 months ago
- Bacterial ribosomal RNA predictor☆234Updated last year
- A tool to circularize genome assemblies☆236Updated 10 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆301Updated 6 months ago
- 🌈 Interactive analysis of metagenomics data☆409Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆191Updated 2 weeks ago
- Classifier for metagenomic sequences☆253Updated 3 months ago
- Plotting scripts for long read sequencing data☆458Updated 2 weeks ago
- Kraken taxonomic sequence classification system☆217Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆478Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆304Updated last year
- A user-friendly workflow for phylogenomics☆204Updated last week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆182Updated last year