biocore / qiimeLinks
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
☆286Updated 2 years ago
Alternatives and similar repositories for qiime
Users that are interested in qiime are comparing it to the libraries listed below
Sorting:
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆273Updated 3 weeks ago
- Kraken taxonomic sequence classification system☆217Updated 3 years ago
- Windowed Adaptive Trimming for fastq files using quality☆224Updated 8 years ago
- a toolkit for working with Oxford nanopore data☆246Updated 2 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆294Updated 7 years ago
- ☆317Updated 5 years ago
- Classifier for metagenomic sequences☆265Updated 2 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Updated last week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆290Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Fast genome and metagenome distance estimation using MinHash☆418Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆353Updated last week
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- PAired-eND Assembler for DNA sequences☆135Updated 4 years ago
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆196Updated 11 months ago
- A tool to circularize genome assemblies☆247Updated last year
- ☆345Updated 6 months ago
- Finds SNP sites from a multi-FASTA alignment file☆266Updated 4 years ago
- Read trimming tool for Illumina NGS data.☆142Updated 10 years ago
- Qiita - A multi-omics databasing effort☆128Updated last week
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆319Updated 6 months ago
- de novo sequence assembler using string graphs☆241Updated 6 years ago
- Bacterial ribosomal RNA predictor☆252Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆274Updated 2 weeks ago
- TransDecoder source☆296Updated last week
- 🌈 Interactive analysis of metagenomics data☆422Updated 3 weeks ago
- Next generation sequencing reads de novo assembler.☆237Updated last year