biocore / qiimeLinks
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
☆286Updated 2 years ago
Alternatives and similar repositories for qiime
Users that are interested in qiime are comparing it to the libraries listed below
Sorting:
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆272Updated last month
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆291Updated 7 years ago
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- ☆341Updated 4 months ago
- PAired-eND Assembler for DNA sequences☆133Updated 4 years ago
- ☆317Updated 5 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- Windowed Adaptive Trimming for fastq files using quality☆221Updated 8 years ago
- Kraken taxonomic sequence classification system☆217Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- Classifier for metagenomic sequences☆261Updated 3 weeks ago
- Read trimming tool for Illumina NGS data.☆139Updated 10 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- TransDecoder source☆294Updated 9 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated this week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆285Updated 2 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆210Updated last week
- GFF and GVF specification documents☆214Updated last year
- Next generation sequencing reads de novo assembler.☆234Updated last year
- Interactively explore metagenomes and more from a web browser.☆480Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆421Updated 10 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆248Updated last year
- Fast genome and metagenome distance estimation using MinHash☆415Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆311Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- Viral genomics analysis pipelines☆195Updated 9 months ago