hansenlab / tricycleLinks
☆25Updated 3 years ago
Alternatives and similar repositories for tricycle
Users that are interested in tricycle are comparing it to the libraries listed below
Sorting:
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- A database of useful gene signatures for single-cell analysis☆25Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 4 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Cell type pipes for R☆51Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 5 months ago
- ☆42Updated 4 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 2 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 3 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- ☆50Updated 5 years ago
- Profile purification of single-cell spatial transcriptomics data☆17Updated this week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- R package for analysing single cell data☆60Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated last year