bioinfo-biols / Code_for_circSCLinks
Analysis pipeline for our circSC manuscript
☆14Updated 3 years ago
Alternatives and similar repositories for Code_for_circSC
Users that are interested in Code_for_circSC are comparing it to the libraries listed below
Sorting:
- ☆18Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- ☆25Updated last year
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last month
- ☆17Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated last year
- ☆17Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆51Updated last year
- ☆17Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆19Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆20Updated 2 years ago
- Peak calling for 4C data☆12Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago