Analysis pipeline for our circSC manuscript
☆14May 18, 2022Updated 4 years ago
Alternatives and similar repositories for Code_for_circSC
Users that are interested in Code_for_circSC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Using RNA-Seq data to improve microRNA target prediction accuracy in animals☆11Feb 15, 2026Updated 8 months ago
- ☆10Mar 11, 2025Updated last year
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 10 years ago
- Circular RNA Identification for Nanopore Sequencing☆23May 23, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated last year
- ☆19Oct 4, 2022Updated 4 years ago
- ☆11Mar 19, 2026Updated 7 months ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- circular RNA quantification tools☆32Jun 17, 2024Updated 2 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 4 years ago
- ☆20Aug 28, 2026Updated 2 months ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆18Jan 17, 2023Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- ☆11Dec 15, 2022Updated 3 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆50Nov 7, 2024Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 4 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆13Jul 26, 2026Updated 3 months ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- ☆10Oct 7, 2024Updated 2 years ago
- ☆11Nov 21, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆41Jul 9, 2024Updated 2 years ago
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- High-Performance Computing in Bioinformatics☆22May 16, 2022Updated 4 years ago