Robust and scalable single-cell signature scoring
☆29Oct 27, 2026Updated this week
Alternatives and similar repositories for pyucell
Users that are interested in pyucell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 11, 2025Updated last year
- Single-cell differential expression☆21Oct 18, 2026Updated last week
- A command-line tool to capture hierarchical relationships at scale☆20Updated this week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Oct 19, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Differential spatial enrichment across conditions☆31Jul 14, 2026Updated 3 months ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- Analysis framework for morphological profiling data☆14Updated this week
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- Gene set scoring for single-cell data☆214Sep 8, 2026Updated last month
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Oct 7, 2026Updated 3 weeks ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pareto Task Inference in Python☆23Oct 19, 2026Updated last week
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- ☆20Sep 17, 2026Updated last month
- factor models for omics data☆49Updated this week
- ☆103Updated this week
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 2 weeks ago
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Updated this week
- ☆22Sep 20, 2026Updated last month
- ☆14Aug 18, 2026Updated 2 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆83Oct 10, 2026Updated 2 weeks ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago
- Single-cell morphological analysis☆16Apr 23, 2026Updated 6 months ago
- ☆30Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- ☆30Updated this week
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 11 months ago
- ☆15May 30, 2026Updated 4 months ago
- SpotSweeper-py: Python version of SpotSweeper package☆11Sep 6, 2026Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- Spatial transcriptomics foundation model based on Graph Transformer and JEPA☆74Aug 10, 2026Updated 2 months ago