Alternatives and similar repositories for Bonsai-data-representation

Users that are interested in Bonsai-data-representation are comparing it to the libraries listed below

• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆89Updated 3 months ago
• lmcinnes / glasbey
  Algorithmically create or extend categorical colour palettes
  ☆225Updated 4 months ago
• sunericd / dynamicviz
  ☆61Updated 8 months ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆101Updated last week
• iskandr / bcb731
  Defense Against the Dark Arts
  ☆78Updated last year
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated last month
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 4 months ago
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated 2 years ago
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated 2 years ago
• Metaboverse / Metaboverse
  Visualization and analysis platform for metabolic data and network pattern recognition
  ☆39Updated 5 months ago
• czi-ai / transcriptformer
  ☆80Updated 3 weeks ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆77Updated last month
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆127Updated 9 months ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 6 months ago
• chrelli / bioRxiv-word-template
  MS Word template for styling a manuscript for a bioRxiv submission
  ☆40Updated 6 years ago
• theislab / vevo_Tahoe_100m_analysis
  ☆29Updated 4 months ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆31Updated last week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 6 months ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆93Updated 8 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆70Updated this week
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆20Updated 10 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated last month
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆16Updated this week
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• lakigigar / bioRxiv-diff
  ☆12Updated last year