Alternatives and similar repositories for Bonsai-data-representation

Users that are interested in Bonsai-data-representation are comparing it to the libraries listed below

• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆71Updated 2 months ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆95Updated 5 months ago
• sunericd / dynamicviz
  ☆61Updated 11 months ago
• lmcinnes / glasbey
  Algorithmically create or extend categorical colour palettes
  ☆227Updated 2 months ago
• iskandr / bcb731
  Defense Against the Dark Arts
  ☆79Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆104Updated last month
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated 2 years ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 9 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆45Updated last month
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 6 months ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆38Updated 3 years ago
• czi-ai / transcriptformer
  ☆93Updated last month
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated this week
• pachterlab / MCML
  ☆33Updated 4 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• bernardo-de-almeida / DeepSTARR_embryo
  Deep learning models to predict enhancers in different Drosophila embryo tissues
  ☆19Updated 2 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 9 months ago
• science-machine / biomlbench
  Benchmark agents on BioML tasks
  ☆60Updated 2 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆56Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆41Updated last year
• GenoML / genoml2
  GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
  ☆33Updated 5 months ago
• SchubertLab / epytope
  ☆23Updated 8 months ago
• theislab / vevo_Tahoe_100m_analysis
  ☆34Updated 7 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 5 months ago
• lakigigar / bioRxiv-diff
  ☆12Updated last year
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated 2 years ago