Alternatives and similar repositories for Bonsai-data-representation

Users that are interested in Bonsai-data-representation are comparing it to the libraries listed below

• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆83Updated last week
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 11 months ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 3 months ago
• sunericd / dynamicviz
  ☆61Updated 5 months ago
• czi-ai / transcriptformer
  ☆52Updated this week
• lakigigar / bioRxiv-diff
  ☆12Updated 9 months ago
• lmcinnes / glasbey
  Algorithmically create or extend categorical colour palettes
  ☆219Updated last month
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆66Updated 5 months ago
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆44Updated 2 weeks ago
• PMBio / bicycle
  Bicycle: Intervention-Based Causal Discovery with Cycles
  ☆34Updated 3 weeks ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆125Updated 6 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆45Updated 9 months ago
• iskandr / bcb731
  Defense Against the Dark Arts
  ☆77Updated last year
• pachterlab / MCML
  ☆33Updated 3 years ago
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated last year
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆99Updated last year
• lucidrains / enformer-tensorflow-sonnet-training-script
  The full training script for Enformer - Tensorflow Sonnet
  ☆18Updated 3 years ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆10Updated this week
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• BorgwardtLab / reComBat
  reComBat package to correct batch effects
  ☆12Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 9 months ago
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆48Updated last week
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated this week
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated 2 months ago
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆85Updated 3 years ago
• TorchDR / TorchDR
  TorchDR - PyTorch Dimensionality Reduction
  ☆130Updated this week