dhdegroot / Bonsai-data-representationLinks
All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout
☆85Updated last week
Alternatives and similar repositories for Bonsai-data-representation
Users that are interested in Bonsai-data-representation are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last week
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆89Updated 3 months ago
- Single-cell multi-omics integration using Optimal Transport☆46Updated last month
- Algorithmically create or extend categorical colour palettes☆226Updated 4 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated 3 weeks ago
- ☆61Updated 9 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆16Updated this week
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Defense Against the Dark Arts☆79Updated last year
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- Multi-modal single cell analysis pipelines☆59Updated last week
- ☆86Updated last month
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated 2 months ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆21Updated 8 months ago
- Distributed single-cell data analysis.☆32Updated this week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆30Updated last month
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆18Updated last year
- Jax code for functional genomics ML☆14Updated 7 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- parallel differential expression for single-cell perturbation sequencing☆17Updated last month
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 3 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Updated 3 months ago
- Create PyTorch Datasets from AnnData☆21Updated 7 months ago
- reComBat package to correct batch effects☆13Updated 2 years ago
- ☆23Updated 6 months ago
- Flow & mass cytometry analytics.☆54Updated last week