Alternatives and similar repositories for Bonsai-data-representation

Users that are interested in Bonsai-data-representation are comparing it to the libraries listed below

• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆87Updated 2 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆101Updated 2 years ago
• iskandr / bcb731
  Defense Against the Dark Arts
  ☆78Updated last year
• lmcinnes / glasbey
  Algorithmically create or extend categorical colour palettes
  ☆224Updated 3 months ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 5 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated 2 weeks ago
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated 2 years ago
• sunericd / dynamicviz
  ☆61Updated 7 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 3 months ago
• bernardo-de-almeida / DeepSTARR_embryo
  Deep learning models to predict enhancers in different Drosophila embryo tissues
  ☆17Updated last year
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated 2 years ago
• SchubertLab / epytope
  ☆21Updated 5 months ago
• pachterlab / MCML
  ☆33Updated 4 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆39Updated last month
• rsinghlab / pyaging
  A Python-based compendium of GPU-optimized aging clocks.
  ☆100Updated 3 weeks ago
• lakigigar / bioRxiv-diff
  ☆12Updated last year
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 2 weeks ago
• funkyheatmap / funkyheatmappy
  Visualising data frames as funky heatmaps 📊, the Python implementation
  ☆17Updated 6 months ago
• GenoML / genoml2
  GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
  ☆33Updated 2 months ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆15Updated this week
• czi-ai / transcriptformer
  ☆73Updated this week
• PierreLambert3 / SQuaD-MDS-and-FItSNE-hybrid
  ☆15Updated 2 years ago
• theislab / vevo_Tahoe_100m_analysis
  ☆28Updated 3 months ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated last month