☆101Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for scPhere
Users that are interested in scPhere are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆55Jan 20, 2025Updated last year
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 3 months ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- A tool for single-cell data analysis.☆42Sep 24, 2025Updated 8 months ago
- ☆13Sep 30, 2023Updated 2 years ago
- ☆20May 20, 2021Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Cloud-based scalable and efficient single-cell genomics workflows☆68May 6, 2026Updated 3 weeks ago
- ☆13Apr 16, 2021Updated 5 years ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- ☆29Feb 1, 2023Updated 3 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆253Apr 1, 2026Updated last month
- ☆11Sep 7, 2023Updated 2 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆269Apr 26, 2026Updated last month
- ☆73Apr 17, 2024Updated 2 years ago
- Deep count autoencoder for denoising scRNA-seq data☆272Mar 21, 2024Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 11 months ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 4 years ago
- ☆38May 10, 2026Updated 2 weeks ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated last year
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆36Apr 9, 2025Updated last year
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆54Jan 17, 2022Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated last month
- ☆69May 2, 2018Updated 8 years ago