klarman-cell-observatory / scPhereLinks
☆100Updated 2 years ago
Alternatives and similar repositories for scPhere
Users that are interested in scPhere are comparing it to the libraries listed below
Sorting:
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- Multi-omic velocity inference☆110Updated 7 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 5 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- ☆130Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- ☆49Updated 5 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- ☆66Updated last year
- ☆45Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- Quantifying experimental perturbations at single cell resolution☆109Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- ☆26Updated 8 months ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆75Updated 2 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Geometry-preserving random sampling☆82Updated 7 months ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- ☆52Updated 4 years ago
- ☆90Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆77Updated 3 weeks ago
- ☆59Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago