Alternatives and similar repositories for brainmapr

Users that are interested in brainmapr are comparing it to the libraries listed below

• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last week
• oganm / allenBrain
  Acquiring images from allen brain atlas, mouse ISH experiments in R.
  ☆16Updated last year
• tudaga / NMFreg_tutorial
  A tutorial on NMFreg applied to cerebellum data.
  ☆12Updated 5 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 10 months ago
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• alexandrovteam / SpaceM
  ☆15Updated 11 months ago
• AllenInstitute / nomenclature
  This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".
  ☆13Updated 3 years ago
• nolanlab / vortex
  VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
  ☆34Updated 2 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 8 years ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆16Updated 4 years ago
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆18Updated 3 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆14Updated 4 years ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated last week
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated last week
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• lamanno-epfl / tomographer
  The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …
  ☆11Updated 4 years ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆22Updated 2 years ago
• pachterlab / voyagerpy
  ☆13Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• linnarsson-lab / adolescent-mouse
  Analysis pipeline for the adolescent mouse nervous system project
  ☆24Updated 7 years ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆27Updated last week
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 6 years ago
• JCVenterInstitute / FRmatch
  Cell type matching in single-cell RNA-sequencing data using FR-Match
  ☆19Updated 5 months ago
• ShobiStassen / PARC
  ☆42Updated last year
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆11Updated 8 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 4 years ago