jin-repo / RACCROCHE

Related projects: ⓘ

• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 5 years ago
• ChenHuaLab / fastHaN
  fastHaN is a fast and scalable program for constructing haplotype networks for large samples
  ☆12Updated 7 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆28Updated last month
• YuboZhangPKU / ERICA
  ☆15Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated 8 months ago
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆47Updated 2 weeks ago
• JM-SONG / GenomeSyn
  ☆19Updated 2 years ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆13Updated 4 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆33Updated last week
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆18Updated 8 months ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆26Updated 3 months ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 5 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 5 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆11Updated 9 months ago
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆19Updated 8 years ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆21Updated 9 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆36Updated 10 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆35Updated 6 years ago
• WeiWei060512 / NUMTs-detection
  Detecting NUMTs from WGS
  ☆11Updated 10 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆35Updated 3 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆15Updated 6 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆31Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆30Updated last month
• hsigeman / findZX
  ☆16Updated 2 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆39Updated 8 months ago
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆11Updated 4 years ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆43Updated last year
• tangerzhang / calc_switchErr
  ☆23Updated 2 years ago