rhysf / HaplotypeToolsLinks
A toolkit for identifying recombination and recombinant genotypes
☆25Updated 2 weeks ago
Alternatives and similar repositories for HaplotypeTools
Users that are interested in HaplotypeTools are comparing it to the libraries listed below
Sorting:
- ☆43Updated last year
- Full GATK SNP calling pipeline☆22Updated last week
- Yet another Hi-C scaffolding tool☆22Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆16Updated 3 years ago
- ☆31Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- ☆41Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 8 months ago
- ☆38Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆31Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- SV calling for diploid assemblies☆29Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- SV genotyper for long reads with a variation graph☆13Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago