davidemms / STAG
STAG: Species Tree from All Genes
☆34Updated 6 years ago
Alternatives and similar repositories for STAG:
Users that are interested in STAG are comparing it to the libraries listed below
- Automatic evaluation of HGTs☆28Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆36Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- ☆22Updated 11 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated 10 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- ☆26Updated 4 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- ☆28Updated last year
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 11 months ago
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆41Updated last month
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆31Updated this week
- A genome assembly assessment pipeline.☆37Updated last year