davidemms / STAG
STAG: Species Tree from All Genes
☆34Updated 6 years ago
Alternatives and similar repositories for STAG:
Users that are interested in STAG are comparing it to the libraries listed below
- Genome Annotation Pipeline☆35Updated 6 months ago
- Automatic evaluation of HGTs☆27Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆32Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- ☆22Updated 10 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- TGS scaffolding☆46Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated 9 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆68Updated 3 months ago
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Tiberius is a deep learning gene finder.☆52Updated this week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year