Alternatives and similar repositories for Analysis-pipeline:

Users that are interested in Analysis-pipeline are comparing it to the libraries listed below

• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆19Updated 7 months ago
• MarcooLopez / Genomic-Selection
  ☆24Updated 4 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆26Updated 6 years ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆16Updated 3 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆37Updated 2 years ago
• jendelman / StageWise
  two-stage analysis of multi-environment trials for genomic selection and GWAS
  ☆22Updated 6 months ago
• cma2015 / G2P
  G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…
  ☆12Updated 7 years ago
• hemstrow / snpR
  ☆29Updated this week
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 3 months ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆19Updated 2 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• guilherme-pereira / QTLpoly
  R package for random-effect multiple QTL mapping in autopolyploids
  ☆9Updated 3 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated last month
• TXiang-lab / blupADC
  blupADC:An useful tool for animal and plant breeding
  ☆24Updated 2 months ago
• YinLiLin / KAML
  Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
  ☆41Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 6 months ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆27Updated 10 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆27Updated 3 months ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆25Updated 2 years ago
• Capblancq / RDA-landscape-genomics
  ☆28Updated 3 years ago
• steuernb / AgRenSeq
  ☆12Updated 2 years ago
• ShiuLab / Manuscript_Code
  Repository for code used for publications
  ☆26Updated 3 weeks ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆33Updated 8 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆62Updated last year
• LiLabAtVT / CompareTranscriptome
  repository of scripts for comparative transcriptome analysis
  ☆18Updated 5 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆19Updated 5 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆12Updated 4 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year