whussain2 / Analysis-pipeline
☆34Updated 3 years ago
Alternatives and similar repositories for Analysis-pipeline:
Users that are interested in Analysis-pipeline are comparing it to the libraries listed below
- ☆24Updated 4 years ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated 9 months ago
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆26Updated 2 months ago
- Genetic maps in autopolyploids☆29Updated last month
- Tutorials for bioinformatics and data analysis related to landscape genomics☆27Updated 6 years ago
- ☆30Updated last week
- ☆39Updated 2 years ago
- lme4 for Genomic Selection☆17Updated 3 years ago
- Simulation of Pleiotropic, Linked and Epistatic Phenotypes☆13Updated last year
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 6 months ago
- blupADC:An useful tool for animal and plant breeding☆27Updated 5 months ago
- GWAS software that can handle autopolyploids☆28Updated 6 months ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆12Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last month
- R package for random-effect multiple QTL mapping in autopolyploids☆9Updated 3 years ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆20Updated 5 months ago
- Perform GWAS using the FarmCPU model.☆23Updated 4 months ago
- ☆25Updated 3 years ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 2 years ago
- Analysis of transposable elements☆10Updated last week
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 4 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆30Updated last month
- Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…☆8Updated 5 years ago
- Shiny apps for teaching Population Genetics☆64Updated 2 years ago
- Plant breeding simulations with AlphaSimR☆18Updated 3 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆38Updated last year
- Suit of R-scripts to perform landscape genomic analyses☆13Updated 4 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago